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Detailed information on CNT30372941


BLAST search results

BLAST vs Swiss-Prot:
sp|O49344|PSBP2_ARATH, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673595Arabidopsis thalianaSetaria viridis6.1725.2188.1459forward
CNT30631059Arabidopsis thalianaVigna unguiculata21.1354.8980.2202forward
CNT30712300Arabidopsis thalianaGlycine max17.6820.8185.8169forward
CNT30164849Arabidopsis thalianaPistacia vera17.3629.1784.34166forward
CNT30290454Arabidopsis thalianaTriticum aestivum7.3232.4187.1470forward
CNT30561726Arabidopsis thalianaActinidia chinensis18.5136.1281.36177forward
CNT3088598Arabidopsis thalianaVigna radiata13.727.5888.55131forward
CNT30236483Arabidopsis thalianaBrassica oleracea20.6121.8994.92197forward
CNT30510234Arabidopsis thalianaSolanum lycopersicum12.9720.1385.48124forward
CNT30313622Arabidopsis thalianaCamelina sativa35.9855.9390.7344forward
CNT30263549Arabidopsis thalianaBrassica rapa12.4530.5193.28119forward
CNT30611239Arabidopsis thalianaArabis alpina9.5242.7290.1191forward
CNT30610134Arabidopsis thalianaGossypium raimondii17.2669.6284.85165forward
CNT30624588Arabidopsis thalianaDaucus carota14.5468.8181.29139forward
CNT30680882Arabidopsis thalianaTriticum urartu7.3220.4187.1470forward
CNT30619846Arabidopsis thalianaCajanus cajan15.4826.5781.76148forward
CNT30356129Arabidopsis thalianaLactuca sativa14.9635.6683.22143forward
CNT30727018Arabidopsis thalianaLupinus angustifolius19.2527.3481.52184forward

Expression of CNT30372941

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MDFLSVGVTMTLRLLVASKLSSNLRTCPGYSISLLGFHFAGTCTLNPSPLYGKKSVFVFGFPNTFGERHVTLG*

>peptide 2 (34 aa)
MRRKMMIVRLMKPMRSGVGNTHCTPLSLSLFLSFS

>peptide 3 (36 aa)
MMTPECLLLPLHCYQLKKLLSFVLSVNNEGDNVFSL*

>peptide 4 (37 aa)
MGSLPQRQSHRSKLVSLGDDGVKQRPERGTLRENRNQ*

>peptide 5 (45 aa)
MKKASRALLRCVAFTQATLKEVAALSTNFLAPLNHLLSPACALQM*

Sequence

>CNT30372941
AGTCTGTTATCATAGGTACACAAGTGATGCCGAAAAGGTAACATCATCTTGATAGTTCTCAAAAGCTCAGTTTCATTTTCCATTTTTTACAAGAGACAAA
TGAAGAAAGCAAGCAGAGCATTGTTACGTTGTGTTGCTTTCACTCAAGCAACACTGAAAGAAGTGGCTGCGCTCTCGACAAATTTCCTGGCTCCCTTGAA
CCACCTCTTGTCTCCAGCTTGTGCTTTGCAGATGTAAAGCTTCCCTCCATTCACGGTTGCTGTGATCAGCTGATGCTTCCCACCTTCGTCTCCATCAGCC
GTTCTTGTCAACACAGACAAGTAATAGTAGGGTTTCCCACCAACTTCCTGAGATGATGACTCCAGAATGTTTGCTGTTGCCACTGCATTGTTATCAGTTA
AAAAAGCTTTTGAGTTTTGTTTTATCAGTTAACAACGAGGGAGACAATGTGTTCTCTCTTTAGTGTTTGATTCTCTTATTCTATTCTATCAGCTTCTGGT
TTACTTATAACAAATAACAATGGGAAGTTTACCTCAGAGGCAGTCTCACCGAAGTAAGCTTGTTTCCCTAGGAGATGATGGAGTAAAGCAAAGACCTGAG
AGAGGAACTCTTCGGGAGAACCGTAATCAGTGATGGACTTCTTGTCGGTAGGAGTGACCATGACATTGAGATTGCTAGTAGCATCGAAGTTGTCTTCGAA
CCTAAGGACTTGTCCTGGATACTCAATCTCTTTGCTTGGGTTCCATTTTGCTGGAACCTGCACTTTGAACCCATCTCCATTGTATGGCAAGAAGTCTGTG
TTCGTCTTTGGCTTCCCAAACACGTTTGGAGAGCGACACGTGACGCTGGGATGAGGAGGAAGATGATGATCGTGCGGCTGATGAAGCCAATGCGCTCTGG
TGTAGGAAACACGCACTGTACGCCATTATCTCTGTCTCTCTTTCTCTCTTTCTCTC