CANTATAdb - search

Detailed information on CNT30712300

BLAST search results

BLAST vs Swiss-Prot:
sp|P29795|PSBP_SOLLC, E-value = 6e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30372941	Glycine max	Arabidopsis thaliana	20.81	17.68	85.8	169	forward
CNT30164849	Glycine max	Pistacia vera	20.94	29.88	87.65	170	forward
CNT30561726	Glycine max	Actinidia chinensis	20.57	34.08	80.84	167	forward
CNT30144738	Glycine max	Medicago truncatula	8.13	20.89	90.91	66	forward
CNT30313622	Glycine max	Camelina sativa	16.38	21.63	83.46	133	forward
CNT30610134	Glycine max	Gossypium raimondii	20.07	68.78	83.44	163	forward

Expression of CNT30712300

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MKLVDKKGPHNSRHTHPFKMIYMQNSTPLIKFLGNTERTCCALHKSSCSLKPPLVSSLSLANV*

>peptide 2 (31 aa)
MYSLPSFTVAVISWCLPPSSPSAVLVNTVKL*

Sequence

>CNT30712300
GCTTAATCAAAGAGAGAAAAAGGGGGACAAGAGAGGAGGGTAAGTCCTTAGAAGACATGAAAAATTAAGAATCGAAGTGCTTACTCCAACCAACAGCCTC
AAATAATGAAACTTGTGGACAAAAAGGGGCCACATAATTCAAGACATACACACCCCTTCAAGATGATTTACATGCAGAATAGCACTCCACTAATTAAGTT
CTTAGGCAACACTGAAAGAACTTGCTGTGCTCTCCACAAATCTTCTTGCTCCCTTAAACCACCTCTTGTCTCCAGCTTGAGCCTTGCAAATGTATAGTTT
GCCATCTTTCACTGTTGCTGTAATCAGCTGGTGCTTGCCACCTTCATCTCCATCAGCTGTCCTTGTCAACACAGTCAAACTGTAGTGAACCATAGTCAGT
GATGGACTTCTTGTCAGTTGCAGTGACCATGACAGCAACATTGCTGGTTGAATCAAAATTGTCCTCATATCTAAGAACCTGACCTGGGTACTCAACCTCT
TTGCTTGGGTTCCACTTTGAGGGAATTGAGAGTTTGAATCCATTCCCATTGTATGAAAGGAACACAGTGAGGGCCAACCTGCGAGAGACAAGGCCAGTAG
TAGTGTCCTCACCCTCTTGGACAGTAACCTGCTTCTGTGCTGCCTTGCAAACAATGTGGTTTGGGCGTGGTGGTGCAAAAAGCATTGTGTCGAGGCCATT
GTGCTCAAAATCTTTGCCCTCTGGCCTGTGAATCAGACACTATAGTAGTAAGTAGCAGGTAAGTAGGCAAAGTGTTGTGTGTGGTGGACTTGGAAGTGGC
TTTAGATGTGGG