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Detailed information on CNT30557390


BLAST search results

BLAST vs Swiss-Prot:
sp|P16059|PSBP_PEA, E-value = 9e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694998Panicum halliiOryza sativa19.1222.6993.08130forward
CNT30673818Panicum halliiSetaria viridis23.6842.2698.76161forward
CNT30521677Panicum halliiSetaria italica35.1595.2296.65239forward
CNT30180672Panicum halliiSecale cereale11.9133.3390.1281forward
CNT30290454Panicum halliiTriticum aestivum25.1579.1788.89171forward
CNT30387265Panicum halliiTriticum turgidum24.7129.7991.07168forward
CNT30560151Panicum halliiActinidia chinensis20.1510.9384.67137forward
CNT30554351Panicum halliiOryza glaberrima33.0933.6392225forward
CNT30242255Panicum halliiAvena sativa73.0981.4885.71497forward
CNT30132332Panicum halliiLolium perenne73.0944.7786.52497forward
CNT30610134Panicum halliiGossypium raimondii15.2943.8884.62104forward
CNT30624588Panicum halliiDaucus carota10.8836.6385.1474forward
CNT30680245Panicum halliiTriticum urartu28.5341.7288.66194forward
CNT30349048Panicum halliiEragrostis tef3541.6892.44238forward
CNT30356129Panicum halliiLactuca sativa16.1827.4382.73110forward
CNT30583062Panicum halliiEchinochloa crusgalli72.0663.0690.61490forward

Expression of CNT30557390

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MRAEINPCRDEMELSLVFVLMYNQRPERTRMPSLCIYVSIPEPKETNSVLMRR*

Sequence

>CNT30557390
GCATTATTAGTACTAGGAGTTCTTAAACATCGTGGATGAGAGCAGAAATCAATCCTTGCAGGGACGAAATGGAGCTCTCCTTGGTCTTTGTTCTCATGTA
CAATCAAAGGCCGGAGCGCACACGCATGCCCAGCCTCTGTATCTACGTAAGCATCCCTGAACCAAAAGAAACAAATTCCGTGCTTATGCGACGCTGAAGG
AGCTGGCTGCCTTCTCGACGCCCTTCCTGGCGCCCTTGAACCACCTCTTGTCGCCGGCCTGCGCCTTGCAGATGTAGAGCTTGCCGTCCGAGACGGTGGC
CGTGATGAGCTGGTGCTTCCCGCCCTCGTCGCCGTCCGCCGTCCTGGTCAGCACGGACACGCTGTAGTACTGCTTCCCATCGATCACCGGCGCCGAGCTC
TCCAGGATGTTGGCCGTGGCCTGCTTGCCGAGGAGGTAGTCGACCTGGGCGAGGAACTCCTCGGGCGAGCCGTAGTCGGTGATGGTCTTCTTGGTGGTGG
GCTGGACCATGACGGAGACGTTGCTGTTGGCGTCGAAGTTGTCCTCGTAGCGGAGCACCTGGCCGGGGAACTCACGCTCCTTGCTGGGGTTCCACTTGGA
CGGGATCAGCAGCTTGAACCCGTCGCCGCTGTAGGCGATGAAGTCCGTGTTCGTCTTGGGCTTCCCGAACACGTTGGCTG