Detailed information on CNT30680245


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00434|PSBP_WHEAT, E-value = 5e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673818Triticum urartuSetaria viridis27.5333.690.62128forward
CNT30521507Triticum urartuSetaria italica29.2534.5290.44136forward
CNT30561726Triticum urartuActinidia chinensis24.323.0687.61113forward
CNT30554351Triticum urartuOryza glaberrima41.5128.8590.67193forward
CNT30242255Triticum urartuAvena sativa47.135.995.43219forward
CNT30132332Triticum urartuLolium perenne47.119.7394.98219forward
CNT30610134Triticum urartuGossypium raimondii23.6646.4186.36110forward
CNT30356129Triticum urartuLactuca sativa24.328.1883.19113forward
CNT30583062Triticum urartuEchinochloa crusgalli39.3523.5590.16183forward
CNT30557390Triticum urartuPanicum hallii41.7228.5388.66194forward

Expression of CNT30680245

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MHALDRSLHGASLRKFPLNSPDPAAFSTNFLAPLNHLLSPACALQT*

Sequence

>CNT30680245
TGCCAACATAGATAAGGAGATACAAAAATGAAACATTATTACTAAGATTTCTTAATCATTGTGCACACATGAATCCTTGAGGGAAATCGACCTCTTAGTT
CATCCATCCTCATGTACAAATCAAAGAAACACACATGCATGCCCTCGATCGGTCTCTACACGGTGCATCCCTGAGGAAATTTCCATTAAACTCGCCGGAT
CCTGCGGCGTTCTCGACGAACTTCTTGGCGCCCTTGAACCACCTCTTGTCTCCGGCTTGCGCCTTGCAGACGTAGAGCTTGCCGTCGGCGACGGTGGCGG
TGATGAGCTGGTGCTTCCCTCCCTCGTCTCCGTCCGCGGTCCTCGTGAGCACCGTTATGCTGTAGTACTGCTTACCGTCCACCACCGGCGCCGAGCTCTC
CAGCACGTTCGCCGTCGCCACAGCGTCTGACTCGAACCCACCCTGCATCCCCACATCGTCAGCAC