« Back to Triticum turgidum search


Detailed information on CNT30387265


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694998Triticum turgidumOryza sativa23.0522.6989.23130forward
CNT30673818Triticum turgidumSetaria viridis27.6640.9489.1156forward
CNT30521507Triticum turgidumSetaria italica29.2641.8889.09165forward
CNT30180672Triticum turgidumSecale cereale28.0165.0294.3158forward
CNT30290454Triticum turgidumTriticum aestivum34.5790.2898.97195forward
CNT30561726Triticum turgidumActinidia chinensis19.8622.8687.5112forward
CNT30554351Triticum turgidumOryza glaberrima28.7224.2288.89162forward
CNT30242694Triticum turgidumAvena sativa60.8260.2894.46343forward
CNT30133222Triticum turgidumLolium perenne96.8160.3386.45546forward
CNT30610134Triticum turgidumGossypium raimondii19.546.4186.36110forward
CNT30680603Triticum turgidumTriticum urartu60.6474.0399.12342forward
CNT30349048Triticum turgidumEragrostis tef28.0127.6788.61158forward
CNT30356129Triticum turgidumLactuca sativa19.8627.9383.04112forward
CNT30576990Triticum turgidumOryza barthii20.3919.4689.57115forward
CNT30583123Triticum turgidumEchinochloa crusgalli31.2136.1489.2176forward
CNT30117183Triticum turgidumOryza nivara23.0519.2389.23130forward
CNT30557390Triticum turgidumPanicum hallii29.7924.7191.07168forward

Expression of CNT30387265

Peptides detected in this lncRNA

>peptide 1 (29 aa)
IEALPTKIRRYKNETLLLRFLNHCAHMNP*

>peptide 2 (72 aa)
MSWCFPPSSPSAVLEEADLGEELLRGTVVGDGLLGGRVDYNGEVAGGVEVVLVAEHLPRELTLLAGVPLGRDH

>peptide 3 (96 aa)
MHALDRSLHGSSLRKFPLNSPVGRVYLCDAEGSCGVLDELLGALEPPLVSGLRLADVELAVGDGGGDELVLPSLVSVRGPRGSRPGRGTPQGNRSR*

Sequence

>CNT30387265
AATTGAAGCGCTGCCAACAAAGATAAGGAGATACAAAAATGAAACATTATTACTAAGATTTCTTAATCATTGTGCACACATGAATCCTTGAGGGAAATCG
ACCTCTTAGTTCATCCATCCTCATGTACAAATCAAAGAAACACACATGCATGCCCTCGATCGGTCTCTACACGGTTCATCCCTGAGGAAATTTCCATTAA
ATTCGCCGGTCGGTCGTGTATATTTATGCGACGCTGAAGGATCCTGCGGCGTTCTCGACGAACTTCTTGGCGCCCTTGAACCACCTCTTGTCTCCGGCTT
GCGCCTTGCAGACGTAGAGCTTGCCGTCGGCGACGGTGGCGGTGATGAGCTGGTGCTTCCCTCCCTCGTCTCCGTCCGCGGTCCTCGAGGAAGCCGACCT
GGGAGAGGAACTCCTCAGGGGAACCGTAGTCGGTGATGGTCTTCTTGGTGGTCGGGTTGATTATAACGGAGAGGTTGCTGGTGGCGTCGAAGTTGTCCTC
GTAGCGGAGCACCTGCCCAGGGAACTCACGCTCCTTGCTGGGGTTCCACTTGGCCGGGATCATC