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Detailed information on CNT30133222


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00434|PSBP_WHEAT, E-value = 2e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694998Lolium perenneOryza sativa14.3622.6990.77130forward
CNT30673818Lolium perenneSetaria viridis17.4641.4791.77158forward
CNT30290454Lolium perenneTriticum aestivum19.4581.4896.02176forward
CNT30387265Lolium perenneTriticum turgidum60.3396.8186.45546forward
CNT30561726Lolium perenneActinidia chinensis12.1522.4584.55110forward
CNT30243706Lolium perenneAvena sativa65.64102.4192.76594forward
CNT30657847Lolium perenneTriticum dicoccoides7.423.0298.5167forward
CNT30610134Lolium perenneGossypium raimondii11.4943.8884.62104forward
CNT30356129Lolium perenneLactuca sativa12.1527.4381.82110forward

Expression of CNT30133222

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MHMPLLYTYGASLSKFSIKFADRSIDGSHIYATLKDPAAFSTNFLAPLNHLLSPACALQT*

>peptide 2 (51 aa)
MQPRRSSAPCRRAAGCARLLARGAPRRPAARWTGGGSRRWTPLLLSAVCLA*

>peptide 3 (38 aa)
MVEGNRPLVHPFLMYNQRNTHAHAPPLHVRCIPEQIFD*

Sequence

>CNT30133222
AAAAAAGAAACATTATTACCGCTAAGATTTCTTAATCACTGTCCAGACATGAATGGTTGAGGGAAATCGACCTCTTGTTCATCCATTCCTCATGTACAAT
CAAAGAAACACACATGCACATGCCCCTCCTCTACACGTACGGTGCATCCCTGAGCAAATTTTCGATTAAATTCGCCGACCGATCGATCGATGGGAGTCAT
ATTTATGCGACGCTGAAGGATCCGGCGGCGTTCTCGACGAACTTCTTGGCGCCCTTGAACCACCTCTTGTCCCCGGCCTGCGCCTTGCAGACGTAGAGCT
TGCCGTCGGCGACGGTGGCGGTGATGAGCTGGTGCTTGCCTCCCTCGTCGCCGTCCGCCGTCCTGGTGAGCACCGTTATGCTGTAGAACTGCTCAGGGGA
TCCGTAGTCGGTGATGGTCTTCTTGGTGGTGGGCTGGATGACGACGGAGAGGTTGCTGGTGGCGTCGAAGTTGTCCTCGTAGCGGAGCACCTGGCCGGGG
AACTCACGCTCCTTGCTCGGGTTCCACTTGGCCGGGACCAGCAGCTTGAACCCCTCCCCGGTGTACGTCTTGAAGTCCGTGTTCTTCTTCGCCTTCCCGA
ACACGTTGGCTGCACACAGATCAAACATTCATGCATGCATATTTCATTCACCCGAAACGAGACCGTCTCGTCTGAATAGGCGTTCTTTCTTCGTACCTGC
TTCTCCGTAGGCGGCGGCGGCCGGTGAGACCTTGACGGCGTCAGATGCAGCCTCGTCGTTCTTCTGCGCCTTGCAGACGAGCAGCTGGGTGCGCCCGACT
GCTGGCGCGGGGCGCGCCGAGGCGGCCAGCCGCGCGGTGGACTGGTGGAGGAAGCAGGAGGTGGACGCCATTGCTGCTATCTGCTGTCTGCTTAGCTTAG
CTTAG