Detailed information on CNT30244221


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00434|PSBP_WHEAT, E-value = 4e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694998Avena sativaOryza sativa25.6422.6990.77130forward
CNT30561726Avena sativaActinidia chinensis21.722.4587.27110forward
CNT30610134Avena sativaGossypium raimondii21.145.1585.05107forward
CNT30356129Avena sativaLactuca sativa21.727.4382.73110forward
CNT30576990Avena sativaOryza barthii22.6819.4691.3115forward
CNT30117183Avena sativaOryza nivara25.6419.2390.77130forward

Expression of CNT30244221

Peptides detected in this lncRNA

>peptide 1 (29 aa)
IHSSCTIKETHTCTCPLLHVRCIPDPEQV*

>peptide 2 (46 aa)
MSWCFPPSSPSAVLRNCSGDPYSVMVFLVVGLITTERLLVASKLSS*

>peptide 3 (43 aa)
HPFLMYNQRNTHMHMPSSTRTVHPRPRASLIKFPDRSVIFMRR*

>peptide 4 (30 aa)
SIPHVQSKKHTHAHALFYTYGASPTPSKFD*

Sequence

>CNT30244221
CATCCATTCCTCATGTACAATCAAAGAAACACACACATGCACATGCCCTCTTCTACACGTACGGTGCATCCCCGACCCCGAGCAAGTTTGATTAAATTCC
CTGATCGATCGGTCATATTTATGCGACGCTGAAGGATCCCGCTGCGTTCTCGACGAACTTCTTGGCGCCCTTGAACCACCTCTTGTCTCCGGCCTGCGCC
TTGCAGACGTAGAGCTTGCCGTCGGCGACGGTGGCGGTGATGAGCTGGTGCTTCCCTCCCTCGTCCCCGTCGGCCGTCCTGAGAAACTGCTCAGGGGATC
CGTACTCGGTGATGGTCTTCTTGGTGGTGGGGTTGATTACGACGGAGAGGTTGCTGGTGGCGTCGAAGTTGTCCTCGTAGCGGAGCACCTGTCCGGGGAA
CTCACGCTCCTTGCTCGGGTTCCACTTGGCCGGGATCAACAGCTTGAAACCCTCCCCGCTGTACGTCTTGAAGTCCGTGTTCTTCTTCGCCTTCCCGAAC
ACGTTCG