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Detailed information on CNT30554351

BLAST search results

BLAST vs Swiss-Prot:
sp|O49344|PSBP2_ARATH, E-value = 7e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694998	Oryza glaberrima	Oryza sativa	50.37	58.81	99.7	337	forward
CNT30673818	Oryza glaberrima	Setaria viridis	23.32	40.94	93.59	156	forward
CNT30521507	Oryza glaberrima	Setaria italica	24.22	41.12	93.83	162	forward
CNT30712213	Oryza glaberrima	Glycine max	13.3	36.33	83.15	89	forward
CNT30290454	Oryza glaberrima	Triticum aestivum	25.41	78.7	88.82	170	forward
CNT30387265	Oryza glaberrima	Triticum turgidum	24.22	28.72	88.89	162	forward
CNT30561726	Oryza glaberrima	Actinidia chinensis	24.36	33.27	83.44	163	forward
CNT30242255	Oryza glaberrima	Avena sativa	32.88	36.07	90	220	forward
CNT30132332	Oryza glaberrima	Lolium perenne	32.44	19.55	91.24	217	forward
CNT30610134	Oryza glaberrima	Gossypium raimondii	21.38	60.34	83.92	143	forward
CNT30680245	Oryza glaberrima	Triticum urartu	28.85	41.51	90.67	193	forward
CNT30356129	Oryza glaberrima	Lactuca sativa	16.89	28.18	82.3	113	forward
CNT30583062	Oryza glaberrima	Echinochloa crusgalli	33.63	28.96	91.56	225	forward
CNT30117183	Oryza glaberrima	Oryza nivara	64.72	64.05	99.77	433	forward
CNT30557390	Oryza glaberrima	Panicum hallii	33.63	33.09	92	225	forward

Expression of CNT30554351

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MYSLPSLTVAVISWCLPPSSPSAVLVSTVTL*

Sequence

>CNT30554351
GCTCCTACATATATATGAGTGACATGTCAAGCATGGATTAAATTAACATAGATACAAAAATGAAACATGATTAATTACTAGGATTACTTAACACACGGAT
CACAGAAAATCAATCCTTGCATGCAGGGGAAATCGATGGATCGACCTCTCTCCTTAACTTGTTCTTAATTCTCATGTACAATCAAAGAAACACACACGCA
CACACACATGCGTGCACTGCATCTCTCTGAGCAACGAACTCGATTGATTTAATTTTGATTCGCTAGGGATTAAAGAGAAGCTGAGATAGAGATTTCGACG
ATCATGCGACGCTGAAGGAGCTGGCTGCGCTCTCGACGAACTTCCTGGCGCCCTTGAACCACCTCTTGTCGCCGGCCTGCGCCTTGCAGATGTACAGCTT
GCCGTCGTTGACGGTGGCCGTGATCAGCTGGTGCTTGCCGCCCTCGTCGCCGTCCGCCGTCCTCGTCAGCACCGTTACGCTGTAGTACTGCTTCCCTCCC
ACCACCGGCGCCGAGCTCTCCAGGATGTGGACGCCATTGCCGGCCGGTGGGCTGGTGCCTCGCCGCTGATTGCCTGCCTGAGAGTGGAGCGGTGTGTAGT
GTGGTGGAGGGAGAGGGTGATGGGGCGAGGTGGCGACGGGATAACGAAGAGGAGAGCGCGGTGGGGGCG