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Detailed information on CNT30510234


BLAST search results

BLAST vs Swiss-Prot:
sp|P29795|PSBP_SOLLC, E-value = 1e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372941Solanum lycopersicumArabidopsis thaliana20.1312.9785.48124forward
CNT30712213Solanum lycopersicumGlycine max17.2143.2789.62106forward
CNT30164849Solanum lycopersicumPistacia vera18.6720.2186.96115forward
CNT3088598Solanum lycopersicumVigna radiata16.7221.6888.35103forward
CNT30610134Solanum lycopersicumGossypium raimondii17.0544.385.71105forward
CNT30356129Solanum lycopersicumLactuca sativa14.7722.6983.5291forward

Expression of CNT30510234

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MRTYIADSNFLGTDTWFCTSLIPCVVVWFVLIYRKKQLVN*

>peptide 2 (36 aa)
LVTSLCLANVKFAIIHCGCDQLVLSTFISICSSCQY*

Sequence

>CNT30510234
TCTTGTCACCAGCTTGTGCCTTGCAAATGTAAAGTTTGCCATCATTCACTGTGGCTGTGATCAACTGGTGCTTTCCACCTTCATCTCCATCTGCAGTTCT
TGTCAATACTGACAAGTAGTAGTACTCTTTTCCTCCCACTGTTAGCAGTTGCCACTGCACCAGATTCAAATCCTCCCTGCACAAACGAATCCCCATTTCA
TTTTTCCCCATGCATTAGTTCAGTTAAATTTAGGACAATTGCAGGGCGGAGCAACACAGACAATGAGGACCTATATAGCCGACTCCAACTTCCTTGGGAC
GGACACATGGTTTTGCACTTCACTCATTCCATGTGTTGTTGTATGGTTTGTTTTGATTTATAGGAAAAAACAGTTGGTAAATTGAAATGCATTTTACTTA
CTTGCGTGGGTGGTGTATGATTACTTGTTACAATCTTACGGAGTGATTCTGCCCCTTGAAGACTACTTTACAGGGTAGCTTATATACTGACTGAATTGTA
GACTCATTTGTTCATACTCGAAGCTAGCAGTTGCTCAAGTTATATAGAAGTGGGTTTAATGTTAGTGATCTTTACTCATGTCATAAGAATTGTAGCTAGT
AGTTATGATTACTTAC