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Detailed information on CNT30290454


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694998Triticum aestivumOryza sativa60.1922.6989.23130forward
CNT30673818Triticum aestivumSetaria viridis72.2240.9489.1156forward
CNT30521507Triticum aestivumSetaria italica75.9341.6289.02164forward
CNT30372941Triticum aestivumArabidopsis thaliana32.417.3287.1470forward
CNT30164849Triticum aestivumPistacia vera24.549.3188.6853forward
CNT30387265Triticum aestivumTriticum turgidum90.2834.5798.97195forward
CNT30561726Triticum aestivumActinidia chinensis52.3123.0687.61113forward
CNT3088598Triticum aestivumVigna radiata24.5411.1688.6853forward
CNT30236483Triticum aestivumBrassica oleracea34.268.2287.8474forward
CNT30554351Triticum aestivumOryza glaberrima78.725.4188.82170forward
CNT30243706Triticum aestivumAvena sativa80.0929.8397.69173forward
CNT30133222Triticum aestivumLolium perenne81.4819.4596.02176forward
CNT30610134Triticum aestivumGossypium raimondii50.9346.4186.36110forward
CNT30680882Triticum aestivumTriticum urartu83.852.7797.79181forward
CNT30356129Triticum aestivumLactuca sativa52.3128.1883.19113forward
CNT30576990Triticum aestivumOryza barthii53.2419.4689.57115forward
CNT30583062Triticum aestivumEchinochloa crusgalli79.6322.1487.79172forward
CNT30117183Triticum aestivumOryza nivara60.1919.2389.23130forward
CNT30557390Triticum aestivumPanicum hallii79.1725.1588.89171forward

Expression of CNT30290454

Peptides detected in this lncRNA

>peptide 1 (70 aa)
PFNSPVGRVYLCDAEGSCGVLDELLGALEPPLVSGLRLADVELAVGDGGGDELVLPSLVSVRGPREHQLIT

>peptide 2 (40 aa)
HLIHRSVVYIYATLKDPAAFSTNFLAPLNHLLSPACALQT*

Sequence

>CNT30290454
TCCATTTAATTCACCGGTCGGTCGTGTATATTTATGCGACGCTGAAGGATCCTGCGGCGTTCTCGACGAACTTCTTGGCGCCCTTGAACCACCTCTTGTC
TCCGGCTTGCGCCTTGCAGACGTAGAGCTTGCCGTCGGCGACGGTGGCGGTGATGAGCTGGTGCTTCCCTCCCTCGTCTCCGTCCGCGGTCCTCGTGAGC
ACCAGCTCATCACCGC