Detailed information on CNT30164849


BLAST search results

BLAST vs Swiss-Prot:
sp|O49344|PSBP2_ARATH, E-value = 2e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372941Pistacia veraArabidopsis thaliana29.1717.3684.34166forward
CNT30712300Pistacia veraGlycine max29.8820.9487.65170forward
CNT30290454Pistacia veraTriticum aestivum9.3124.5488.6853forward
CNT3088598Pistacia veraVigna radiata21.4425.6889.34122forward
CNT30510234Pistacia veraSolanum lycopersicum20.2118.6786.96115forward
CNT30610134Pistacia veraGossypium raimondii29.3570.4685.03167forward
CNT30619846Pistacia veraCajanus cajan26.0126.5787.84148forward
CNT30727018Pistacia veraLupinus angustifolius29.5324.9680.95168forward

Expression of CNT30164849

Peptides detected in this lncRNA

>peptide 1 (49 aa)
GCDSGNETRISSITPSTGITFDYLNAIVTNAVIISTANKDHNSVCKQGS*

>peptide 2 (33 aa)
MHPQDFCNIPQLETQNPWMKMDNTTRKQHNILS*

>peptide 3 (50 aa)
MIMKKLINVLSNTERICSALHEFSCTLKPPLVSSLCLANVKLAIFNSGYN*

Sequence

>CNT30164849
GTGGATGTGATTCTGGTAATGAAACCAGAATTAGCAGCATTACTCCAAGCACAGGTATAACTTTTGATTATCTTAATGCAATTGTGACAAATGCGGTTAT
AATTAGTACAGCGAACAAAGACCATAATTCAGTCTGTAAACAAGGCAGCTGAAATTCTAGATTTGATGAATTAGATGCCGCAAATATTCTAAGAAATGGA
CTAATGGTCCTTATATGCATCCACAAGATTTTTGCAACATCCCTCAATTAGAAACTCAAAACCCTTGGATGAAGATGGACAATACAACTCGAAAACAACA
TAATATATTAAGTTGATTTACATGATAATGAAAAAACTCATTAATGTCTTAAGCAACACTGAAAGAATTTGCAGCGCTCTCCACGAATTTTCTTGCACCC
TTAAACCACCTCTTGTCTCCAGCTTGTGCCTTGCAAATGTAAAGCTTGCCATCTTTAACAGTGGCTATAATTAACTGATGTTTCCCCCCTTCATCTCCAT
CAGCTGTTCTTGTCAATATTGACAATGTGTAGTATTGTTTCCCACCAATCACTGGGGTTGAGCTCTCCA