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Detailed information on CNT30104230


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 2e-48

BLAST vs NONCODE:
NONBRAT002258, E-value = 4e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697306Oryza rufipogonOryza sativa29.6847.6299.45731forward
CNT30677380Oryza rufipogonSetaria viridis8.7751.5591.67216forward
CNT30640852Oryza rufipogonNymphaea colorata4.4731.784.55110forward
CNT30702585Oryza rufipogonQuercus lobata2.1923.3888.8954forward
CNT30377016Oryza rufipogonArabidopsis thaliana3.3722.884.3483forward
CNT30710572Oryza rufipogonGlycine max6.4135.3580.38158forward
CNT30223084Oryza rufipogonHordeum vulgare6.4620.3888.68159forward
CNT30586190Oryza rufipogonMusa acuminata3.5333.7286.2187forward
CNT30541563Oryza rufipogonBrassica napus5.7721.2980.99142forward
CNT30237332Oryza rufipogonBrassica oleracea5.253.3381.25128forward
CNT3075755Oryza rufipogonBrassica juncea5.7720.8580.99142forward
CNT30261311Oryza rufipogonBrassica rapa9.4260.8982.76232forward
CNT30139084Oryza rufipogonLolium perenne8.6125.390.09212forward
CNT3017013Oryza rufipogonZea mays6.7426.4392.17166forward
CNT3068263Oryza rufipogonLeersia perrieri6.6621.5598.17164forward
CNT30128108Oryza rufipogonCorymbia citriodora6.4630.486.16159forward
CNT30683741Oryza rufipogonTriticum urartu6.5837.4189.51162forward
CNT30477141Oryza rufipogonArabidopsis halleri5.1246.3280.95126forward
CNT30597047Oryza rufipogonOryza meridionalis11.6529.5397.91287forward
CNT30371334Oryza rufipogonOryza glumipatula12.5536.4899.68309forward
CNT30150970Oryza rufipogonBrachypodium distachyon7.6778.4289.42189forward
CNT30578122Oryza rufipogonOryza barthii12.6339.4799.36311forward
CNT30582099Oryza rufipogonEchinochloa crusgalli6.730.6193.33165forward
CNT30117954Oryza rufipogonOryza nivara26.4747.1199.69652forward
CNT30551796Oryza rufipogonOryza brachyantha12.7139.9793.29313forward
CNT3040010Oryza rufipogonMarchantia polymorpha4.8726.3781.67120forward

Expression of CNT30104230

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MPSLASAASPSLVYLPSCASELALARRSSASCAAFTFSGCPPHVLRHVFCVASTSDCPPDKNCTKQQSINIIDQLYFQVYS*

>peptide 2 (66 aa)
MSNKDQGSVWSEIHTLSTLIPGTIFCSVRMSTIFLPSTVDWYRVSSKRIAPEMYCPKPGAVTRRVR*

>peptide 3 (43 aa)
MYIYAKLCSNQIDSQATHTGSIQIRLHTRLLQRQNTRYVYQTL*

>peptide 4 (57 aa)
MQYSFNFVHRSQPVTVTTHWLQCPRGTSSIAVAVVRSSSSSRFTVLIGLDRISRRSS*

>peptide 5 (29 aa)
MARIPLPGDAMVFYSKKDKVFNLLVLNHN*

>peptide 6 (30 aa)
MHYITLKSRFELEMPVYLNHVISKQVFYVH*

>peptide 7 (35 aa)
MSCLDADVEFTNVLLVYFESLSSFGIHKSYLFYFL*

>peptide 8 (43 aa)
MPPRARQGRRDLGTMTRCWSQQGAQDPDIEHKFRRINVVVPSI*

Sequence

>CNT30104230
TTATGTGGTGCCAGAGCAGGGAACAGATTGTGAAGCAAGGCTAAGGGGGTAACCAGAATAATTCCAGAATCACAAGCATGTATATATACGCAAAACTTTG
CAGTAACCAAATCGATTCACAGGCCACACATACAGGTAGTATACAGATTCGTCTACACACAAGGTTATTGCAGAGGCAAAACACGAGGTATGTATATCAA
ACGCTCTAGAAAAGATTCATGTGATGAAATACATGATGAACCACGTATGTTCTCAAGGTAAAATTAATTAATGCAGTATAGTTTTAACTTTGTCCATCGA
TCTCAACCTGTAACTGTGACGACACACTGGCTACAGTGCCCTCGAGGTACTAGCAGTATAGCAGTAGCTGTAGTACGTAGCAGCAGCAGCAGCAGGTTCA
CTGTCTTGATTGGATTGGATCGGATTAGTAGACGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGC
TGCGCCAGCGAGTTGGCCTTGGCGCGGAGGAGCAGCGCGTCCTGCGCCGCCTTCACGTTCTCCGGCTGCCCGCCCCACGTCTTGAGGCACGTGTTCTGCG
TCGCCTCCACCTCCGACTGCCCACCCGACAAGAACTGCACCAAACAACAATCAATCAATATTATCGATCAGCTCTACTTTCAGGTTTATTCTTGATCATC
TACATCTGCAGAGACAGTTAGTAGTATCGTTGTGCAAGAAGAATCATGTCAGAATTAGCAGATCAACATTTGCAGTGGCAGTTTCTTGATCAACATTTCC
AGTCAGGTTAAGCCATTTTGCAAGAAGAATCAGGTTAAGCTTTTAACATTTGCAGCGGCGGTTTCTTGATCAACATTCCAAGTCAGGTTAAGCCATTTTG
CAAGAAGTAAAGCAATATTAGTAGCTTCCTAAGCTTTAGTTTCAGTTTCTTTATCAGTGGTAGAATGCTGACCATGATGCCGGGGACGGCAGGGGGGATC
CTTCTGTGGAGGAGCTTGAGGGTGTAGTCAGATACTTGCTCAGGGGTGGCCCTGTCCTTGCACTCGGCACCGGGTGTCACCATGCTTGGCTTGAGGAGGA
TGCCCTCGAACATCACATTGTTCTCGGCCATGTAGAAGAAGGCCCCAGGCAGCCTCCTTCACGGCGAGTTCAGATGGGCCGTTGGGGATGCTGACAACAG
TGCGCCTGAAGATGAAGAACTTCATGTCAGACACTGGAATGATATCCACAAATGATAGTATGTGAAAGGTAACTGGCCATTATATTTGTAGGTGAAAAAT
TTGTCTCACCACTTGGCGAAGCGAGCGCCCTGCTGGTAGTATGCCGCCTCGCGCGAGGCAAGGCCGTCGAGACCTTGGCACCATGACTCGTTGTTGGAGC
CAGCAAGGGGCACAAGACCCTGACATCGAGCACAAATTCAGAAGAATTAATGTTGTAGTTCCTTCAATCTAGAACAATGATTTTCTCTAGTAATAACAAC
AACTCTAACACATTCAGTTCTTTAACAGCTTTAATAAATTTGATACTACTTTGAATGAGCAACAAGGATCAGGGGTCAGTTTGGAGTGAAATTCATACCT
TGTCGACCTTGATACCTGGAACGATTTTCTGCTCGGTGAGGATGTCGACAATCTTCTTGCCATCTACAGTTGACTGGTACAGAGTCTCCTCGAAGAGGAT
AGCACCGGAGATGTACTGTCCCAAGCCCGGTGCGGTGACAAGGAGGGTCCGGTAAGCCTGGCGGTTGGCCTCGGTGTTCTCAAGGCCAATTGACGCAAGC
CTCTTACCGCAGGTCGCGTTCGACTCATCCATGGCAAGGATACCCCTTCCTGGTGATGCAATGGTTTTCTACAGCAAGAAGGATAAAGTTTTTAATCTTC
TAGTTCTGAATCATAATTGAATGAAAAACTCATCTTAAGAATTTATTTATCCAAAGTTGATAAAAGTATGCTTGTTATGTTGTAGGATTAGAAGTTCCAA
ACTTTTCTTCTGAATTATGACCTGCAGATGGTTCATAGAACATAAGCAGGACACATGAATGCTTCATGCTTTATCCTTACAACTGCTAGTGGTTAACCCA
TGTCATGTCTTGATGCAGATGTCGAGTTTACAAATGTATTACTAGTATATTTTGAGTCTCTAAGTTCATTTGGTATACACAAATCATATCTATTTTACTT
TCTGTGAAGTTGAAGATAGAAATTTTCCTTCAAATGCATTATATAACTTTGAAGAGTAGATTTGAACTAGAGATGCCAGTATATTTGAATCATGTTATAT
CAAAACAGGTGTTTTATGTTCACTGAATTCTGCTATATATAACTTAGCTTGACTGCACATCCTATTTGATTTCCTGACGATAAAGTGCTTATATCTATCA
TGAAACTACATAAAGTTCCTTCACTTGTCATTGATATAAAGAGGAAACAAATGCATGCCAAAA