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Detailed information on CNT30367530


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697243Sorghum bicolorOryza sativa48.5312.8293.33165forward
CNT30676761Sorghum bicolorSetaria viridis49.4152.0194.64168forward
CNT30524148Sorghum bicolorSetaria italica53.2427.4795.03181forward
CNT30223084Sorghum bicolorHordeum vulgare44.4119.3688.74151forward
CNT30588905Sorghum bicolorMusa acuminata3039.5382.35102forward
CNT30662744Sorghum bicolorTriticum dicoccoides52.3533.3390.45178forward
CNT30139084Sorghum bicolorLolium perenne48.2419.5791.46164forward
CNT3017013Sorghum bicolorZea mays49.4126.7596.43168forward
CNT3068263Sorghum bicolorLeersia perrieri48.2421.5592.68164forward
CNT30338292Sorghum bicolorEragrostis tef53.2456.5691.71181forward
CNT30371242Sorghum bicolorOryza glumipatula48.5325.1993.33165forward
CNT30150970Sorghum bicolorBrachypodium distachyon5070.5488.82170forward
CNT30578122Sorghum bicolorOryza barthii37.9416.3793.02129forward
CNT30582099Sorghum bicolorEchinochloa crusgalli49.7131.3591.12169forward
CNT30595262Sorghum bicolorEragrostis curvula53.2425.0793.37181forward
CNT30604735Sorghum bicolorOryza punctata41.7616.8492.25142forward
CNT30557232Sorghum bicolorPanicum hallii52.9427.0795180forward

Expression of CNT30367530

Peptides detected in this lncRNA

>peptide 1 (37 aa)
HGEMDRSTCLTMIISTRISERVVRRRYSGDGRGRPGD*

>peptide 2 (67 aa)
MPSLASAASPSEVYLPSCARELALARSSSASCAAVTFSGWPPQVLRQVFCSARARRRGRRRRRWPAGG

>peptide 3 (29 aa)
SRGDGSEYVLNHDHQYTYLGEGRTSAVFR*

Sequence

>CNT30367530
TCACGGGGAGATGGATCGGAGTACGTGCTTAACCATGATCATCAGTACACGTATCTCGGAGAGGGTCGTACGTCGGCGGTATTCCGGTGATGGCCGCGGC
CGGCCGGGCGATTAGTAGCTGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGGAGGTGTACTTGCCGAGCTGCGCCAGGGAGT
TAGCCTTGGCGCGGAGCAGCAGCGCGTCCTGCGCCGCCGTCACCTTCTCCGGCTGGCCGCCCCAGGTCTTGAGGCAGGTGTTCTGCAGCGCGCGGGCGCG
GAGGCGCGGACGACGACGGAGACGGTGGCCGGCCGGGGGG