Detailed information on CNT3017013


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 1e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676761Zea maysSetaria viridis27.7153.8795.4174forward
CNT30523789Zea maysSetaria italica56.0527.7894.89352forward
CNT30223084Zea maysHordeum vulgare37.930.5182.77238forward
CNT30662744Zea maysTriticum dicoccoides26.2730.988.48165forward
CNT30462400Zea maysSaccharum spontaneum26.5912.2788.62167forward
CNT30139084Zea maysLolium perenne47.6135.6889.3299forward
CNT30367530Zea maysSorghum bicolor26.7549.4196.43168forward
CNT30104230Zea maysOryza rufipogon26.436.7492.17166forward
CNT30582099Zea maysEchinochloa crusgalli41.0847.8789.53258forward
CNT30595262Zea maysEragrostis curvula27.0723.5592.94170forward
CNT30557232Zea maysPanicum hallii26.5925.1195.21167forward

Expression of CNT3017013

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MALRFCVASTSDCPPERNMIPGTEGGIRRWRSLRVYAATCSGVALSLASAPGVTMDGFSRMPSNMTLFSAMA*

>peptide 2 (43 aa)
LSWLHGMGMDRSTCLTMISTHVSLGGAAVSRVMAGRLISSCSS*

>peptide 3 (37 aa)
IMASWDGNGSEYVLNHDQYTRISRRGGGIPGDGRAIN*

Sequence

>CNT3017013
TTATCATGGCTTCATGGGATGGGAATGGATCGGAGTACGTGCTTAACCATGATCAGTACACACGTATCTCTCGGAGGGGCGGCGGTATCCCGGGTGATGG
CCGGGCGATTAATTAGTAGCTGTAGTTCTTGACGAACATTCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGGAGGTGTACTTGCCGAGCTGCGCCAGGGAG
TTGGCCTTGGCGCGCAGCAGCAGCGCGTCCTGCGCCGCCTTGACCTTGTCCGGCTGGCCGCCCCAGGTCTTGAGGCAGGAGAAGGACACGTGCCACGGGT
TGGGCCCCTGGTTCATGGCGTTGAGGTTCTGCGTCGCCTCCACCTCCGACTGCCCGCCGGAGAGGAACATGATCCCGGGCACGGAGGGGGGGATCCGGCG
GTGGAGGAGCTTGAGGGTGTACGCGGCCACCTGCTCCGGGGTGGCCCTGTCCTTGGCCTCCGCGCCGGGCGTCACCATGGACGGCTTCAGCAGGATGCCC
TCGAACATGACGTTGTTCTCCGCCATGGCGTAGAAGGTTTCGGCCCACACCTTCTGCGCCACCTCGAACGTGCGCTCGATGCCGTGCTCGCCGTCCAGCA
GGATCTCCGGCTCCACGATCGGCACAAG