Detailed information on CNT30315326


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT000078, E-value = 2e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671299Corylus avellanaSetaria viridis43.5662.4283.33186forward
CNT30618446Corylus avellanaSesamum indicum53.169.2789.43227forward
CNT30402838Corylus avellanaBeta vulgaris23.6512.1585.15101forward
CNT30161998Corylus avellanaPistacia vera53.8624.1184.35230forward
CNT3089948Corylus avellanaSolanum tuberosum42.6239.3182.97182forward
CNT3085275Corylus avellanaVigna radiata52.4636.2581.7224forward
CNT30539350Corylus avellanaBrassica napus38.4125.1184.76164forward
CNT30552540Corylus avellanaOryza glaberrima34.8915.4181.21149forward
CNT30313064Corylus avellanaCamelina sativa41.9222.9881.56179forward
CNT30216129Corylus avellanaKalanchoe fedtschenkoi44.2631.5587.83189forward
CNT30647898Corylus avellanaRosa chinensis53.8633.6782.61230forward
CNT30623304Corylus avellanaDaucus carota45.4317.7885.05194forward
CNT30722298Corylus avellanaTriticum spelta27.1715.1281.9116forward
CNT30570934Corylus avellanaVitis vinifera24.3631.5290.38104forward
CNT30706971Corylus avellanaPrunus avium56.2126.3485240forward
CNT3037416Corylus avellanaCucumis melo53.8634.6983.91230forward
CNT30725405Corylus avellanaLupinus angustifolius16.6320.8285.9271forward
CNT3049292Corylus avellanaCucumis sativus53.8636.4583.48230forward

Expression of CNT30315326

Peptides detected in this lncRNA

>peptide 1 (40 aa)
FILYNQGSWEQKSLKKETILGSKTPLNQVIQVSKIWILRN*

Sequence

>CNT30315326
TATTTATTTTATACAATCAGGGATCGTGGGAACAAAAATCCCTCAAAAAAGAAACAATTCTCGGGAGTAAAACTCCCCTAAACCAAGTTATTCAAGTGAG
TAAAATATGGATCCTAAGAAACTGAACTAAGAAAGATTTTCATCAACATCTATAGGTATAGGGGCAAGAGATGTCTGTTCATCTTAATTAGGCCCCACCA
GAACCATACTTCTTGCCCAACACGATCACCTGAAGCTTGTCATAACCTGCAAGAACACCGGCACCGGCAATGGCACGAAGGATATTTGCACCAGCTCCCT
TAAAGAGAGATTTAGGCCCTTCATTCTTAAGGATTTGAGAGAATGCATCAAAGGAGCTCTTGTACTTGACAGCTTCACCAGATGTCATCATCATTCTTCT
ACGGACAGTGTCAATTGGATAGGAAGC