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Detailed information on CNT30520523


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84RL7|PIP21_MAIZE, E-value = 2e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Setaria italicaOryza sativa17.454.1886.51415forward
CNT30159576Setaria italicaPistacia vera7.7623.3681.08185forward
CNT30180948Setaria italicaSecale cereale18.1121.0790.05432forward
CNT30289867Setaria italicaTriticum aestivum11.1557.8383.46266forward
CNT30221191Setaria italicaHordeum vulgare3.9844.8188.4295forward
CNT30385683Setaria italicaTriticum turgidum5.4158.1194.57129forward
CNT30569510Setaria italicaActinidia chinensis3.4439.4293.982forward
CNT30592144Setaria italicaMusa acuminata7.8881.7486.7188forward
CNT3084810Setaria italicaVigna radiata7.8455.6581.28187forward
CNT30657898Setaria italicaTriticum dicoccoides11.7838.4483.99281forward
CNT30232947Setaria italicaAnanas comosus2.626.1691.9462forward
CNT30218729Setaria italicaKalanchoe fedtschenkoi4.1534.1486.8799forward
CNT30129030Setaria italicaCorymbia citriodora7.7131.1983.15184forward
CNT30681057Setaria italicaTriticum urartu18.9944.4684.33453forward
CNT30148622Setaria italicaBrachypodium distachyon8.9787.790.65214forward
CNT30102682Setaria italicaOryza rufipogon14.7276.9789.74351forward
CNT30604398Setaria italicaOryza punctata22.122.2989.75527forward
CNT30113851Setaria italicaFicus carica3.3528.889580forward

Expression of CNT30520523

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPPKAHAMPRMPTPPHASVPATFGSVWCL*

>peptide 2 (47 aa)
MGRERNPFCLDAFERAKLDILLLLYCYYFPSSPEQRNFFLFACAQTV*

>peptide 3 (32 aa)
MASWAIEACEGDPVALCRMLLWMFLNVPASVC*

>peptide 4 (61 aa)
MCYSGAAGRTRPSSAFYARRWARVCTTTTGCYCAVMHGGRASQVDGSSKNLEDVKLQRFLQ*

>peptide 5 (50 aa)
MGRAKAGHGQTSRSVTSPPHAKGMPTTTRLPRFHLATRYTFAPSVALDQR*

>peptide 6 (78 aa)
MAWDTITQGREGRGRTWPSVRALITRQGRLDPTDHVLQWSRGPDQAQLSFLRAPVGPRVYHHHRMLLCRHARWESQPG*

>peptide 7 (66 aa)
AIRLELLVHASKFSSHHHGLTFSKLKQDDRLLLKQVAKHFSKQVCQRQERLVAKKRRPSRHACPFL*

>peptide 8 (86 aa)
MGHNHTREGGEGEDVAERACPHHTTRTTGPDGPCATVEPRAGPGPAQLFTRAGGPACVPPPPDVTVPSCTVGEPARLTGAVKIWRT*

>peptide 9 (78 aa)
MHAPFSREGTGTPNFVSGLWLLARDFTSADEPPPGSSPRHILTGWVARRQAMDRHHVPSPRRLTRKGCPLPLGYPDFT*

Sequence

>CNT30520523
AGGCAATCAGATTAGAATTACTCGTGCATGCGTCCAAATTCTCGTCACATCATCATGGCCTAACATTTTCCAAACTAAAACAAGATGACAGGCTACTTCT
AAAGCAAGTGGCCAAGCATTTCTCCAAGCAAGTCTGTCAGCGTCAGGAACGATTAGTGGCTAAGAAAAGGAGACCCTCTCGTCATGCATGCCCCTTTCTC
TAGGGAAGGAACTGGAACACCAAACTTCGTTAGTGGCCTCTGGCTTTTAGCGCGCGACTTCACCTCGGCCGATGAACCACCACCAGGGTCCTCACCACGG
CATATTTTGACGGGATGGGTCGCGCGAAGGCAGGCCATGGACAGACATCACGTTCCGTCACCTCGCCGCCTCACGCGAAAGGGATGCCCACTACCACTAG
GCTACCCCGATTTCACCTAGCCACACGCTACACGTTTGCGCCTAGCGTTGCTTTGGACCAGCGGTGAATACGAATTCTTCAAATTCACTCCGTGTGTGGT
TACGTTTCAGTACGTACCATACGGTGGTCCGTGGAACCGTAGTACACGTTGGAGGATTTCAAGAACCAACGGTACGGTGCTAATAATTCATCATGGAGGG
GTGAGACGCTAGAGTCTAGAGAGGAGGCTCACATGGCATGGGACACAATCACACAAGGGAGGGAGGGGAGGGGGAGGACGTGGCCGAGCGTGCGTGCCCT
CATCACACGACAAGGACGACTGGACCCGACGGACCATGTGCTACAGTGGAGCCGCGGGCCGGACCAGGCCCAGCTCAGCTTTTTACGCGCGCCGGTGGGC
CCGCGTGTGTACCACCACCACCGGATGTTACTGTGCCGTCATGCACGGTGGGAGAGCCAGCCAGGTTGACGGGAGCAGTAAAAATCTGGAGGACGTAAAA
TTGCAGAGATTTCTACAGTAGTACTCCGTAGTAAAATTTCAAGTCTAGAGATAAGGTTGGAGCTGATTAGCCCCGGGTCTCTCTATCTGTATTTATTTAC
TTTACTGTTAGGTCCGGGGAGTCATGGCTAGCTGGGCTATTGAGGCCTGTGAGGGTGACCCGGTTGCGCTCTGCCGCATGCTCCTGTGGATGTTCTTGAA
TGTTCCAGCAAGTGTGTGTTAATAACGGTCATTATCAAGACTACGGAAGGCTTAATGACAGTTCTCCGTGTGTAGTGTACTAACCCCTTGAAAATTAAGT
TGTGATATTTAGAATATTTGGAGCTTAGGCATCCACACATCTCTTTCAACGGTCAATTATTTCTTTCTTTTGGACAATGGTTTAGCTGAATTTCAAGCTT
TTGTTCCTCTATCTAACAATAAGCAGCCTCGATGAATAACTTGTGTAACTAGGTACAGACTACTCTAAAAAAGACTAGGTGCAGACAAAATGAATCGTAA
GTGAACCTTTACCTTTCTATCCCCAGCAAAAAAACGTTCTATGGGCCGGGAAAGAAATCCCTTCTGCCTGGACGCCTTTGAAAGAGCCAAACTGGATATT
CTCTTGCTTTTATATTGTTATTATTTTCCTTCTTCACCGGAACAAAGGAATTTCTTTTTGTTCGCATGTGCCCAAACAGTATAGATGGGCAAGATTAGAG
CATGCTAGCATCGCTTGAGCTCTAATTAAGCTAAGTTCGCACAGACATGAAGTAAAAGAAGCTAATAAGCGAGCAAGCTAGCAGATCGAGAGAGAGAAAT
AAATAAAAGAAGAAAAAAGCAGGAGGCCGTGGCGTTGGTCGGGTGCTCACCGGAACGTGGGAGTCGCGGGCGTTGCGCTTGGGGCCGGTGCCGCGGGAGT
ATCCGGAGGCGAGGGAGTTGGCGCCGCCGCCGTACCTGTCGAAGTAGGCGCTCTGGAACGCCTTGACGAGGCCGACGCCGCAGATGGCACCCAGGCACTG
CGCCACGATGTAGAGCAGCGCGCGCACCAGGGACACCTTGCGCGCCAGGAAGAGGCCGAAGGTGACGGCTGGGTTGATGTGCCCCCCCGAGATGCCGGCG
GTGCAGTAGACGAGGACGAAGATCATGCCGCCGAAGGCCCACGCGATGCCGAGGATGCCCACGCCGCCGCACGCGTCGGTGCCGGCCACGTTCGGGTCCG
TCTGGTGCTTGTAACCGATGACGGTGAGCACGGTGATGTAGAGGAAGAGCAGCGTGGCGATGAACTCGGCGATGACGGCGCGGTACAGCGACCAGGAACC
CAGCTCTGCCGCGTCGATCAGCGGCGCCGGGGGAGGGTCCGTGTAGTCCTTGGCGGCGAACTCGCCGCCGCCGGCGCCGCTCTCGATCACGTCGTCCTTG
CCCATGGCTTGGTCTTGGCTTAGCTTGGCAGCTGCGGGACTAGCCGGCCGGGTGCAGAGGTTGGCTTGCAAGAAATGGATGAGAG