Detailed information on CNT30113851


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Ficus caricaOryza sativa22.389.7396.7762forward
CNT30520523Ficus caricaSetaria italica28.883.359580forward
CNT30640394Ficus caricaNymphaea colorata25.9914.486.1172forward
CNT30375820Ficus caricaArabidopsis thaliana27.827.687.0177forward
CNT30730253Ficus caricaCorchorus capsularis27.0816.4885.3375forward
CNT30632234Ficus caricaVigna unguiculata21.317.2588.1459forward
CNT30712585Ficus caricaGlycine max18.7722.2290.3852forward
CNT30190473Ficus caricaSecale cereale57.0420.9387.34158forward
CNT30289517Ficus caricaTriticum aestivum28.8814.479580forward
CNT30225926Ficus caricaHordeum vulgare36.114.7389100forward
CNT30387764Ficus caricaTriticum turgidum28.889.029580forward
CNT30569510Ficus caricaActinidia chinensis29.639.4293.982forward
CNT30592144Ficus caricaMusa acuminata64.6277.8385.47179forward
CNT3084566Ficus caricaVigna radiata27.813.0796.177forward
CNT30553402Ficus caricaOryza glaberrima22.3811.8596.7762forward
CNT30436090Ficus caricaAegilops tauschii28.887.689580forward
CNT30657898Ficus caricaTriticum dicoccoides28.8810.949580forward
CNT3079298Ficus caricaBrassica juncea23.8315.5387.8866forward
CNT30139319Ficus caricaLolium perenne58.1213.7689.44161forward
CNT3013604Ficus caricaZea mays21.34.3196.6159forward
CNT30228928Ficus caricaAnanas comosus20.2214.3696.4356forward
CNT30218729Ficus caricaKalanchoe fedtschenkoi30.3228.9789.2984forward
CNT30214941Ficus caricaHelianthus annuus24.5526.6788.2468forward
CNT30129030Ficus caricaCorymbia citriodora31.4114.7593.187forward
CNT30681057Ficus caricaTriticum urartu30.698.3491.7685forward
CNT30362596Ficus caricaSorghum bicolor29.613.8790.2482forward
CNT30596194Ficus caricaOryza meridionalis22.3814.2596.7762forward
CNT30355349Ficus caricaLactuca sativa26.7112.3391.8974forward
CNT30370054Ficus caricaOryza glumipatula22.3811.8596.7762forward
CNT30109688Ficus caricaOryza longistaminata22.3811.796.7762forward
CNT30331328Ficus caricaDioscorea rotundata64.6234.8980.45179forward
CNT30148068Ficus caricaBrachypodium distachyon36.8217.6289.22102forward
CNT30101372Ficus caricaOryza rufipogon22.388.2296.7762forward
CNT30576241Ficus caricaOryza barthii22.389.3596.7762forward
CNT30116611Ficus caricaOryza nivara26.7136.6393.2474forward
CNT30604398Ficus caricaOryza punctata32.493.8187.7890forward
CNT30176173Ficus caricaVigna angularis23.4721.3186.1565forward

Expression of CNT30113851

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPPKAQAMPRMPTPPQAASVPLIVVSDWFL*

>peptide 2 (34 aa)
QKCQRCSKRGRRSCRRRPRRCRGCRRRRRRRRCR*

>peptide 3 (70 aa)
RNASGAVNEDEDHAAEGPGDAEDADAAAGGVGAVDCGIGLVFVADDSQDGDVEEEESGDELCYQGVRNRV*

Sequence

>CNT30113851
CCAGAAATGCCAGCGGTGCAGTAAACGAGGACGAAGATCATGCCGCCGAAGGCCCAGGCGATGCCGAGGATGCCGACGCCGCCGCAGGCGGCGTCGGTGC
CGTTGATTGTGGTATCGGACTGGTTTTTGTAGCCGATGACAGTCAAGACGGTGACGTAGAGGAAGAGGAGAGTGGCGACGAACTCTGCTATCAAGGAGTG
AGAAACAGAGTGTAGAGAGGGAGAGAGAGAAAGAGAGTGGGGGTGGGTTTTTTTATTTTTTTATTTTTGGGAGTGAG