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Detailed information on CNT30159576


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520523Pistacia veraSetaria italica23.367.7681.08185forward
CNT30535437Pistacia veraEucalyptus grandis12.2527.1784.5497forward
CNT30548370Pistacia veraIpomoea triloba8.5929.1888.2468forward
CNT3070602Pistacia veraQuercus suber25.1363.1780.4199forward
CNT30711842Pistacia veraGlycine max7.0723.8387.556forward
CNT30289517Pistacia veraTriticum aestivum21.8431.2883.24173forward
CNT30221191Pistacia veraHordeum vulgare7.3227.3687.9358forward
CNT30387764Pistacia veraTriticum turgidum21.8419.583.24173forward
CNT30568277Pistacia veraActinidia chinensis8.2121.6790.7765forward
CNT30592144Pistacia veraMusa acuminata10.2335.2290.1281forward
CNT30436608Pistacia veraAegilops tauschii19.1921.1482.24152forward
CNT30657898Pistacia veraTriticum dicoccoides21.9723.882.76174forward
CNT3082727Pistacia veraBrassica juncea15.2825.6981.82121forward
CNT30477240Pistacia veraArabidopsis halleri15.7821.788125forward
CNT30595794Pistacia veraOryza meridionalis7.727.8588.5261forward
CNT30355349Pistacia veraLactuca sativa26.3934.8382.3209forward
CNT30572629Pistacia veraVitis vinifera10.6131.5884.5284forward
CNT30704435Pistacia veraPrunus avium21.3425.5781.66169forward
CNT30318651Pistacia veraAsparagus officinalis9.8523.0185.978forward
CNT30120512Pistacia veraCitrus clementina33.4688.6382.26265forward
CNT30331328Pistacia veraDioscorea rotundata24.4937.8281.44194forward
CNT30148622Pistacia veraBrachypodium distachyon8.5927.8789.7168forward
CNT30101140Pistacia veraOryza rufipogon12.1236.6483.3396forward
CNT30116611Pistacia veraOryza nivara9.4737.138875forward
CNT30176173Pistacia veraVigna angularis8.5922.386.7668forward
CNT30112022Pistacia veraFicus carica10.4829.4391.5783forward

Expression of CNT30159576

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MWLWRTYRRYRRCSKRERRSCHRRPKRYRECRRHRMGQRGQSGSYSR*

>peptide 2 (37 aa)
MSHALSLSPWINFAETKLKQRLKEFERESLAMESALV*

Sequence

>CNT30159576
CATGGGAGTCTCGGGCACTTCTCTTGGGATCAGTTGCAGAGAAAACAGTGTAAACCAAGACAAAAGTTCCGATGATCTCGGCCCCTAAACCGACGCGGGT
GCTGTAGCCATCAGCAAGCTCGTTGGCTCCACCGCCATATCTCTTGTAGTGCGAGCTCTGGAAAGCCTTCACTAACGCAACTCCGCAAATGGCTCCCAAA
CACTGAGCCACCATGTACATCACCGCCCTCACCAGCGACACCTTCCGTGCCAAAAACAGCCCGAACGTCACCGCCGGGTTAATATGACCCCCTGCATTGT
TTCATGTGTAAAAGATTGTAACTTGTTATGTAAATGAAGAAAAGACTAAAACTTTTGTAAGTCTTGAGTGAAGTTTGATGTGGCTGTGGAGGACTTACCG
GAGATACCGGCGGTGCAGTAAACGAGAACGAAGATCATGCCACCGAAGGCCCAAGCGATACCGAGAATGCCGACGCCACCGCATGGGTCAGCGTGGTCAA
TCTGGCTCTTATAGCCGATGACAGTCAGAACGGTGATGTAGAGGAAGAGCAAAGTGGCGATGAACTCGGCGATTAAAGCTCTGTAGAAAGACCACTTGGA
GCTGGAGGTGGGTCTGTGTAGTCCTTGGCTGAGTATGAGCCATGCTCTGAGTCTTTCGCCATGGATTAATTTTGCAGAAACAAAATTGAAACAAAGATTG
AAAGAGTTTGAGAGAGAGAGTTTGGCTATGGAGAGTGCTTTGGTGTGAGATAAATGAAGAGAAGTGAGGGGTATATATGGAGAGAAATGGAT