Detailed information on CNT3084810


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATM4|PIP27_MAIZE, E-value = 4e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520523Vigna radiataSetaria italica55.657.8481.28187forward
CNT30535437Vigna radiataEucalyptus grandis36.0133.8980.99121forward
CNT30632234Vigna radiataVigna unguiculata69.0567.8481.03232forward
CNT30129030Vigna radiataCorymbia citriodora23.5113.3988.6179forward
CNT30477244Vigna radiataArabidopsis halleri28.2716.184.2195forward
CNT30355344Vigna radiataLactuca sativa41.3746.4986.33139forward
CNT30176173Vigna radiataVigna angularis19.3521.3189.2365forward

Expression of CNT3084810

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPPKAQAMPKMPTPSHSLVPEILGSVCLL*

>peptide 2 (42 aa)
CRRCSKRGRRSCHRRPKRCPKCLPRRTRWYRRYWGRSVSCSR*

>peptide 3 (54 aa)
MNSAMAALYKDHLVSSSGSNNGAGVFGLLRDLLNVFGHWKKECRKRVAEEKRVV*

>peptide 4 (85 aa)
AGGAVNEDEDHATEGPSDAQNAYPVALAGTGDIGVGLSLVADNGQDGDVKEEEGGYEFGYGGSVQGPLGELIGVEQRRRSIRVAP*

Sequence

>CNT3084810
TGCCGGCGGTGCAGTAAACGAGGACGAAGATCATGCCACCGAAGGCCCAAGCGATGCCCAAAATGCCTACCCCGTCGCACTCGCTGGTACCGGAGATATT
GGGGTCGGTCTGTCTCTTGTAGCCGATAATGGTCAAGACGGTGATGTAAAGGAAGAGGAGGGTGGCTATGAATTCGGCTATGGCGGCTCTGTACAAGGAC
CACTTGGTGAGCTCATCGGGGTCGAACAACGGCGCCGGAGTATTCGGGTTGCTCCGTGACCTGCTCAACGTCTTTGGCCATTGGAAGAAGGAATGTAGGA
AAAGAGTTGCAGAGGAGAAGAGGGTAGTGTAGTTTT