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Detailed information on CNT30129030


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XUA6|PIP23_ORYSJ, E-value = 4e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520523Corymbia citriodoraSetaria italica31.197.7183.15184forward
CNT30535437Corymbia citriodoraEucalyptus grandis13.7322.6993.8381forward
CNT30221117Corymbia citriodoraHordeum vulgare7.820.9195.6546forward
CNT30569510Corymbia citriodoraActinidia chinensis13.7338.9493.8381forward
CNT30592144Corymbia citriodoraMusa acuminata12.0330.8795.7771forward
CNT3084810Corymbia citriodoraVigna radiata13.3923.5188.6179forward
CNT30659451Corymbia citriodoraTriticum dicoccoides13.5622.2892.580forward
CNT30450547Corymbia citriodoraSaccharum spontaneum11.3621.5488.0667forward
CNT30131632Corymbia citriodoraLolium perenne7.82195.6546forward
CNT30232947Corymbia citriodoraAnanas comosus1024.8991.5359forward
CNT30218729Corymbia citriodoraKalanchoe fedtschenkoi13.7327.9385.1981forward
CNT30204277Corymbia citriodoraHelianthus annuus12.7132.0594.6775reverse complement
CNT30716767Corymbia citriodoraMalus domestica golden8.9822.4690.5753reverse complement
CNT30595794Corymbia citriodoraOryza meridionalis12.0332.4292.9671forward
CNT30148622Corymbia citriodoraBrachypodium distachyon11.0226.6492.3165forward
CNT30575194Corymbia citriodoraOryza barthii7.6321.9595.5645forward
CNT30116611Corymbia citriodoraOryza nivara12.7137.1389.3375forward
CNT30113851Corymbia citriodoraFicus carica14.7531.4193.187forward

Expression of CNT30129030

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MPPKDQAMPRMPTPSQSVPPRALSIWLLYPITVSTVMYRKRRVATNSAMMARGAGGGSR*

>peptide 2 (38 aa)
LLPVIPKSNQEAKQRTQNRRNMRLDWRRPDSNRRPSVC*

>peptide 3 (40 aa)
PPAGHTKIKPRSQAKNTKQKKHETGLASPGLEPETFSVLD*

>peptide 4 (31 aa)
MFSANSINVRVPKLLASRSVILCAPEMPAVQ*

Sequence

>CNT30129030
CCTCCTGCCGGTCATACCAAAATCAAACCAAGAAGCCAAGCAAAGAACACAAAACAGAAGAAACATGAGACTGGATTGGCGTCGCCCGGACTCGAACCGG
AGACCTTCAGTGTGTTAGACTGACGTGATAACCAACTACACCACGACACCACTTCGTTACTCCTTCGATATTTTTTTTCAACTTATTTATGTTCAGTGCA
AACTCTATAAATGTGCGAGTTCCGAAGCTATTAGCATCACGATCGGTAATACTGTGCGCACCAGAAATGCCGGCGGTGCAGTAGACGAGGACGAAGATCA
TGCCGCCGAAGGACCAGGCGATGCCAAGGATGCCGACACCGTCGCAGTCGGTCCCGCCGCGGGCCTTGTCGATCTGGCTCTTGTACCCGATCACCGTCAG
CACGGTGATGTACAGGAAGAGGAGGGTGGCGACGAACTCCGCGATGATGGCCCGGGGCGCCGGCGGCGGGTCGCGGTAGTCCTTGCCGTGGAGGTCCTCC
CCGCGTCGCTCCACCACCTCGACGTCCTTCGCCATGTCCTTAAAAAAATCTTCTTTTTTTTCCTTTAAAAGCTCCGAAGAGAGATTGGAA