Detailed information on CNT30102682


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H5N9|PIP21_ORYSJ, E-value = 5e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520523Oryza rufipogonSetaria italica39.477.5591.67180forward
CNT30546615Oryza rufipogonIpomoea triloba21.0535.6985.4296forward
CNT30385683Oryza rufipogonTriticum turgidum21.2743.6994.8597forward
CNT30552571Oryza rufipogonOryza glaberrima19.334.7897.7388forward
CNT30436090Oryza rufipogonAegilops tauschii28.9512.6887.88132forward
CNT30612661Oryza rufipogonArabis alpina14.2522.4989.2365forward
CNT30139319Oryza rufipogonLolium perenne21.938.5588100forward
CNT30227632Oryza rufipogonAnanas comosus20.3913.888.1793forward
CNT30604398Oryza rufipogonOryza punctata39.477.6198.33180forward

Expression of CNT30102682

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MARTRDTLRARKSPNVTAGLMCPPEMPAVQ*

>peptide 2 (62 aa)
MKIMPPNAHAMPSTPTPPHAASAPEADASVWCLYPITVATVMYRNSSVAMNSAMTARYSDHDP

Sequence

>CNT30102682
ACCGGGACATGTGAGTCGCGGGCGTTGCGCTTGGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGCACGAAGGTGCCGATGATCTCGGCGGCGAGGCCGG
CGCTCTGGAACGCCTTGACGAGGCCGACGCCGCAGATGGCGCCGAGGCACTGCGCCACGATGTAGAGGATGGCGCGGACCAGGGACACCTTGCGCGCCAG
GAAGAGCCCGAACGTCACCGCCGGGTTGATGTGCCCGCCGGAGATGCCGGCGGTGCAGTAGACCAGGATGAAGATCATGCCGCCGAACGCCCACGCGATG
CCGAGCACGCCCACGCCGCCGCACGCCGCGTCGGCGCCGGAGGCCGACGCGTCCGTCTGGTGCTTGTACCCGATCACCGTGGCCACGGTGATGTACAGGA
ACAGCAGCGTGGCGATGAACTCGGCGATGACGGCGCGGTACAGCGACCACGACCCC