Detailed information on CNT30385683


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATM6|PIP24_MAIZE, E-value = 3e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671777Triticum turgidumSetaria viridis37.8431.789.2984forward
CNT30520523Triticum turgidumSetaria italica58.115.4194.57129forward
CNT30375565Triticum turgidumArabidopsis thaliana27.9325.187.162forward
CNT30728378Triticum turgidumCorchorus capsularis25.234.4689.2956forward
CNT30180948Triticum turgidumSecale cereale59.016.3997.71131forward
CNT30586754Triticum turgidumMusa acuminata37.3930.7495.1883forward
CNT30612661Triticum turgidumArabis alpina28.8322.1589.0664forward
CNT3013604Triticum turgidumZea mays59.019.5696.18131forward
CNT30213185Triticum turgidumHelianthus annuus38.7415.5584.8886forward
CNT30477240Triticum turgidumArabidopsis halleri41.4415.9785.8792forward
CNT30362596Triticum turgidumSorghum bicolor31.5311.8494.2970forward
CNT30320106Triticum turgidumAsparagus officinalis37.394.6584.3483forward
CNT30148622Triticum turgidumBrachypodium distachyon59.0153.6990.08131forward
CNT30102682Triticum turgidumOryza rufipogon43.6921.2794.8597forward
CNT30112149Triticum turgidumFicus carica33.339.4390.5474forward
CNT3039904Triticum turgidumMarchantia polymorpha26.583.589.8359forward

Expression of CNT30385683

Peptides detected in this lncRNA

>peptide 1 (72 aa)
RDVRVACAALGVGGGEDGVDEHEGADDLRGEALGHHVEQRADQGDLARQEEAEGDGRVDVAPGDAGGAVDEDE

Sequence

>CNT30385683
ACCGGGACGTGAGAGTCGCGTGCGCTGCGCTTGGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGCACGAAGGTGCCGATGATCTCCGCGGCGAGGCACT
GGGCCACCATGTAGAGCAGCGCGCGGACCAGGGAGACCTTGCGCGCCAGGAAGAGGCCGAAGGTGACGGCCGGGTTGATGTGGCCCCCGGAGATGCCGGC
GGTGCAGTAGACGAGGACGAAG