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Detailed information on CNT30450547


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Saccharum spontaneumOryza sativa21.548.7586.5767forward
CNT30180948Saccharum spontaneumSecale cereale41.486.2982.17129forward
CNT30289867Saccharum spontaneumTriticum aestivum27.9718.9185.0687forward
CNT30221631Saccharum spontaneumHordeum vulgare21.224.7386.3666forward
CNT30387873Saccharum spontaneumTriticum turgidum27.9717.1386.2187forward
CNT30569510Saccharum spontaneumActinidia chinensis18.0126.9291.0756forward
CNT30592144Saccharum spontaneumMusa acuminata18.0124.3591.0756forward
CNT3085023Saccharum spontaneumVigna radiata22.8314.6787.3271forward
CNT30554969Saccharum spontaneumOryza glaberrima64.9523.7688.61202forward
CNT3079298Saccharum spontaneumBrassica juncea22.8316.7185.9271forward
CNT30139319Saccharum spontaneumLolium perenne28.947.6984.4490forward
CNT30227632Saccharum spontaneumAnanas comosus27.9712.9186.2187forward
CNT30129030Saccharum spontaneumCorymbia citriodora21.5411.3688.0667forward
CNT30681057Saccharum spontaneumTriticum urartu31.839.7285.8699forward
CNT30331328Saccharum spontaneumDioscorea rotundata27.6516.7684.8886forward
CNT30151223Saccharum spontaneumBrachypodium distachyon79.4263.8283.81247forward
CNT30116611Saccharum spontaneumOryza nivara20.5831.6887.564forward
CNT30604398Saccharum spontaneumOryza punctata28.33.7285.2388forward

Expression of CNT30450547

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MKMVAPKDQATPRAPTPLHASAFLYPMTVAMLT*

>peptide 2 (98 aa)
AGAVDEDEDGGAEGPGDAEGADTLARFGVLVPDDGRDAHVEEDEGGYELGDERAVQGPLLQLARVQQRGRRRIPVRRLRRGLRLRRLDGHVLLRHGFS*

>peptide 3 (59 aa)
MRVAMNSAMSARYRDHFFSSLVSSSGAGGGSQYGAFAAASASAVSMATSCFDMVSLSREI

Sequence

>CNT30450547
CCGCCGGTGCAGTAGACGAGGATGAAGATGGTGGCGCCGAAGGACCAGGCGACGCCGAGGGCGCCGACACCCTTGCACGCTTCGGCGTTCTTGTACCCGA
TGACGGTCGCGATGCTCACGTAGAGGAAGATGAGGGTGGCTATGAACTCGGCGATGAGCGCGCGGTACAGGGACCACTTCTTCAGCTCGCTCGTGTCCAG
CAGCGGGGCCGGCGGCGGATCCCAGTACGGCGCCTTCGCCGCGGCCTCCGCCTCCGCCGTCTCGATGGCCACGTCCTGCTTCGACATGGTTTCTCTTAGT
AGAGAAATTTC