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Detailed information on CNT3085023


BLAST search results

BLAST vs Swiss-Prot:
sp|A0A6M3QG69|PIP27_MUSAC, E-value = 2e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180948Vigna radiataSecale cereale25.215.9586.07122forward
CNT30289517Vigna radiataTriticum aestivum38.843481.91188forward
CNT30387764Vigna radiataTriticum turgidum38.8421.281.91188forward
CNT30568278Vigna radiataActinidia chinensis26.4525.9689.06128forward
CNT30436090Vigna radiataAegilops tauschii25.8312.0184125forward
CNT30657898Vigna radiataTriticum dicoccoides38.8425.7281.38188forward
CNT3079298Vigna radiataBrassica juncea34.7139.5387.5168forward
CNT30450547Vigna radiataSaccharum spontaneum14.6722.8387.3271forward
CNT3013604Vigna radiataZea mays24.598.6985.71119forward
CNT30653715Vigna radiataRosa chinensis32.0226.5987.1155forward
CNT30214941Vigna radiataHelianthus annuus17.7733.7390.786forward
CNT30478156Vigna radiataArabidopsis halleri13.4322.8186.1565forward
CNT30325169Vigna radiataAsparagus officinalis10.952088.6853forward
CNT3035626Vigna radiataCucumis melo30.9926.7985.33150forward
CNT30604398Vigna radiataOryza punctata37.67.780.77182forward

Expression of CNT3085023

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSETLRARKRPKVTAGFMCPPKCRRCSKRERKSCHRRPKLCREGQRHHKDRSVSCDR*

>peptide 2 (80 aa)
DKHKCADNLGTESSAFGVARTDGVGTAAEGVVGVLHEGLDQPDAADSTKALCYNVENSTDERDLARQEKAKSDRWVYVST*

Sequence

>CNT3085023
GACAAGCACAAATGTGCCGATAATCTCGGCACCGAGAGCAGTGCCTTTGGAGTAGCCAGAACTGACGGAGTTGGCACCGCCGCCGAGGGAGTTGTAGGGG
TGCTTCATGAAGGCCTTGACCAACCCGACGCCGCTGATAGCACCAAGGCACTGTGCTACAATGTAGAGAACAGCACGGATGAGCGAGACCTTGCGCGCCA
GGAAAAGGCCAAAAGTGACCGCTGGGTTTATGTGTCCACCTAAATGCCGGCGGTGCAGTAAACGAGAACGAAAATCATGCCACCGAAGGCCCAAGCTATG
CCGAGAAGGCCAACGCCATCACAAGGACCGGTCTGTTTCTTGTGACCGATGACGGTGGCGACGGTGACATAGAGGAAGAGGAGGGTGGCGATGAACTCGG
CGATGAGGGCTCTGTAGAAGGACCAGAGCTTAATCTCGGCGAGGTCGATGAGAGGGGCGGGAGGAGGGTCGAAGTAGTCCTTCC