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Detailed information on CNT30554969


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671184Oryza glaberrimaSetaria viridis17.0625.880.69145forward
CNT30450547Oryza glaberrimaSaccharum spontaneum23.7664.9588.61202forward
CNT30151223Oryza glaberrimaBrachypodium distachyon27.1859.6985.71231forward

Expression of CNT30554969

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MPVPVIGIVARCTTNTANPIGSGTSTGMKESRAVRLGTNMVAPNDHATPR*

>peptide 2 (41 aa)
MHTDTYRHSTYFTTIHTLTLKVPNKTDNRRMHRSYHMHDRP*

>peptide 3 (71 aa)
MSVAMNSAMRARYSDHLPSSLVSSSGAGGGSQYGAFAAAPPPSTVSTATSSFDAMAFSLTPYHHEDDEPTKR

Sequence

>CNT30554969
CAGTATAATAATTACCACGACAACATACGCACACATATTGACATAATTAAGCCTGCTACGTAACAAAGCATCATCCATAAACACGCGTACCGTGCCGTGC
ATGCATACAGATACATACAGGCACTCCACTTATTTTACAACCATTCACACTCTCACACTGAAAGTCCCAAATAAAACTGACAACAGACGCATGCATCGAT
CATATCATATGCATGATCGTCCATAGTCGTAGATTGTAAATTGAACAACGAAATCAAGAACAATTAATCAAGCAGCTGATCGATCTCTCGTATCAAATGA
ACATCGTCGTCTTCCTCACGCCGTCACGCTGGTGCTCCTGAACGAGCTGAGCGCCTTGGCGGCCTCGCCGCGCAGCACCAGCTTGTGGCTCCTCGCCGGG
TTGATGCCCGTGCCGGTGATCGGAATCGTCGCCAGGTGCACGACGAACACCGCGAACCCGATCGGCAGCGGCACGAGTACGGGGATGAAGGAGTCGCGGG
CGGTGCGCTTGGGGACGAATATGGTGGCACCGAACGACCACGCCACGCCGAGGTAGCCGACGCCGGTGCACGCGTCGACGGTGGCCCTCTGGTTCTTGTA
CCCGATCACGGTGGCGATGCTCACGTAGAGGAAGATGAGCGTCGCCATGAACTCCGCGATGAGGGCACGGTACAGCGACCACTTACCCAGCTCGCTCGTG
TCCAGCAGCGGCGCCGGCGGCGGGTCCCAGTACGGCGCCTTCGCCGCCGCCCCTCCGCCCTCCACCGTCTCCACGGCCACCTCCTCCTTCGACGCCATGG
CCTTCTCTCTTACTCCTTATCACCACGAAGACGATGAGCCAACAAAGAGG