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Detailed information on CNT30221631


BLAST search results

BLAST vs Swiss-Prot:
sp|Q651D5|PIP27_ORYSJ, E-value = 7e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671184Hordeum vulgareSetaria viridis8.3220.6492.24116forward
CNT30535437Hordeum vulgareEucalyptus grandis8.1131.6585.84113forward
CNT30289867Hordeum vulgareTriticum aestivum11.8435.8795.15165forward
CNT30387873Hordeum vulgareTriticum turgidum11.8432.4896.36165forward
CNT30450547Hordeum vulgareSaccharum spontaneum4.7321.2286.3666forward
CNT30680357Hordeum vulgareTriticum urartu9.948.5986.96138forward
CNT30570969Hordeum vulgareVitis vinifera4.6623.6490.7765forward
CNT30318651Hordeum vulgareAsparagus officinalis6.6727.4383.8793forward
CNT30115855Hordeum vulgareOryza nivara9.1835.9688.28128forward

Expression of CNT30221631

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPRKSSVATNSAITARYRDHLVSSSASKSGAGGGSE*

>peptide 2 (61 aa)
MVAILCRSIRYTSIFHPFIWMYDEHHTSTQVRFGFSRFNLVLDVIVTTAYQNSNCETNINY*

>peptide 3 (81 aa)
VFLCRCHVTHKLQECAKKILEGQSVGREVARVLLSHPYPGSLVKIIDLLSVLIATFELMDEEHHKSLCLVLFKLEPASDLV*

Sequence

>CNT30221631
TAGTTTTTCTTTGCAGATGTCATGTCACACATAAGCTACAGGAGTGTGCAAAAAAAATACTTGAAGGCCAATCAGTGGGGAGAGAGGTCGCTCGAGTTTT
ATTAAGTCATCCTTATCCCGGGTCCTTGGTCAAAATAATCGACCTGCTCAGCGTTCTGATCGCTACCTTTGAACTTATGGACGAGGAACACCACAAAAGT
TTATGTCTAGTTCTTTTTAAGCTTGAGCCTGCAAGTGATCTAGTCTAGAACCAGTCATTTGGGATGACATAGTGCAGTATGGGTTTAATAAAGTTATGGT
AGCTATCTTGTGCCGTTCGATAAGATATACTAGTATATTCCATCCGTTCATATGGATGTATGATGAACACCACACGTCCACACAAGTTCGGTTTGGGTTT
TCTAGGTTTAATTTAGTCTTGGATGTGATTGTGACCACTGCTTACCAAAACAGTAACTGTGAGACCAATATTAATTACTAGCAGAGACATGGGGTAGTGT
GTGGCGGTACGTACGTGGTCATCCCAGGCCTTCTCGTTGTTGTAGATCACGGCAGCTCCGAAGCTCCTCGCCGGGTTGATGCCGAGGAAGAGCAGCGTGG
CCACGAACTCGGCGATCACCGCGCGGTACAGGGACCACTTGGTCAGCTCCTCGGCGTCGAAGAGCGGCGCCGGCGGCGGGTCGGAGTAGTCCTTGGCCGC
GTACTCCCCGCCGGGTGGCGCCGCCTCGATGTCCTTGGCCATCGTCGCCCCTTTAACCGATCGACAAGGTCCGGCGTGCGGTGGTGCCCAAGGTGCGAGC
TAGTGCGCTGAGGCTGCTCCGTGTGGTGGTGTGAGGCGAGGAGCACACGGACGTGGTATTTATGGCGGCGAGGCGCGAGGGCGGCTACTGGCTCACGGCG
AAAGGCCGGCGTAGGGCGCTCGCTTTGCGATTAACTAGCTTTGTTTAATGGCTGGGGGTTTATTAGTGGAGGATAAGGGCGCCCTCCCGTTAGCGTCTTG
TTTCTAGGTTATAAACTTTGCCGCCCACGGCCCTCATCATTGCATCACGTCTCGCTGGTGGCTGCGCCTAATACGGTGGAGCTTATACCTTTTGATTTAA
ATTAGTGGCTCGGTATGCACACATACATACACAATAACACAATCGATGGTTTGAGGTGACGGCAGATTTTGGTTTGTGCGTCACAGCGTGAGCTTAATTG
CCTGCAGCTGAGTGTGTTGTGTCTTGTGTGGAGCACTGGCAAGCACCTGCTGAGTTCGTTTGCTACGAGTATTTGGCGCCAAATTTTGTACTATTGTTGA
CATTTGTCTGGGTTCTCCACTAATGAACAACTGCTCAATCAGCGGTCTGGTTGCTAATCATGCGCAGGCACGTCACAAAGGACCACCCTCTAAT