« Back to Ananas comosus search


Detailed information on CNT30227632


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K215|PIP22_ORYSJ, E-value = 3e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671184Ananas comosusSetaria viridis2327.5887.1155forward
CNT30535437Ananas comosusEucalyptus grandis15.1328.5783.33102forward
CNT30190473Ananas comosusSecale cereale21.2218.9490.21143forward
CNT30289867Ananas comosusTriticum aestivum23.5934.5785.53159forward
CNT30387873Ananas comosusTriticum turgidum23.5931.386.16159forward
CNT30568277Ananas comosusActinidia chinensis9.220.6710062forward
CNT30592144Ananas comosusMusa acuminata17.9552.6188.43121forward
CNT30450547Ananas comosusSaccharum spontaneum12.9127.9786.2187forward
CNT30139319Ananas comosusLolium perenne21.2212.2290.91143forward
CNT30681057Ananas comosusTriticum urartu24.3316.0985.98164forward
CNT30362596Ananas comosusSorghum bicolor22.2625.3884.67150forward
CNT30318651Ananas comosusAsparagus officinalis23.4446.6183.54158forward
CNT30148622Ananas comosusBrachypodium distachyon7.8621.7294.3453forward
CNT30102682Ananas comosusOryza rufipogon13.820.3988.1793forward
CNT30116009Ananas comosusOryza nivara28.1923.3487.89190forward

Expression of CNT30227632

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKIMPPKAQAASVGLTLGSDWCLYPMTVATVT*

Sequence

>CNT30227632
ATACACATATGCGCGAAATTTTAGTTATTCTTTCTTTCTTTCTTTTCTGACCGTAAGACACAGAATGATTTCATATCCCTAGAGTTCGTTACAGTTGTAG
CTTCATTTGTTTCAAAATACTCTACTTTTTAAGTAGTTATTTTTCTCGAGAAATTTTTACCGCATGTAATAAAAGTGTACAAACGTAAGATTCCAAAAAG
AAAACAATGAAATAATTCATCAGACGCCGACTGATTGAGACGTGTTTTTTCTGCCGTCTATCAGATAGCATTAATTTGCGTGCAGAAAAAGACGCATGTC
AAGAGATAAGAAAGAGAAAGAAAAAAAAGTACCGGAGATGCCGGCGGTGCAGTAGACGAGGATGAAGATCATGCCGCCGAAGGCCCAGGCGGCGTCGGTG
GGGTTGACGTTGGGGTCGGACTGGTGCTTGTACCCGATGACGGTCGCGACGGTGACGTAGAGGAAGAGCAGCGTGGCGATGAACTCCGCGATCACCGCCC
GGTACAGCGACCATTTGGTCAGCTCCTCTGCATCTATCAGTGCAGCCGGCGGCGGGTCCGCGTAGTCCTTCGCCGTGAATTCTCCCCCCTCGCCCACGGC
CTCCACGTCTTTCGCCATTATCAACCCCTCTGATCACTACTAGAGAGAGAAAAGTAACTCAATTGGATTAGTGG