« Back to Dioscorea rotundata search


Detailed information on CNT30331328


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XLR1|PIP26_ORYSJ, E-value = 7e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Dioscorea rotundataOryza sativa53.2242.8681.32273forward
CNT30676770Dioscorea rotundataSetaria viridis9.5523.2295.9249forward
CNT30519732Dioscorea rotundataSetaria italica12.4822.390.6264forward
CNT30712585Dioscorea rotundataGlycine max10.1422.2294.2352forward
CNT30159576Dioscorea rotundataPistacia vera37.8224.4981.44194forward
CNT30289517Dioscorea rotundataTriticum aestivum48.3444.8586.29248forward
CNT30221191Dioscorea rotundataHordeum vulgare9.7523.589050forward
CNT30387764Dioscorea rotundataTriticum turgidum48.3427.9686.29248forward
CNT30569510Dioscorea rotundataActinidia chinensis16.3740.3892.8684forward
CNT30592144Dioscorea rotundataMusa acuminata17.7439.5792.3191forward
CNT30553402Dioscorea rotundataOryza glaberrima53.2252.281.32273forward
CNT30436608Dioscorea rotundataAegilops tauschii33.9224.287.93174forward
CNT30254684Dioscorea rotundataAvena sativa9.7522.229850forward
CNT30657898Dioscorea rotundataTriticum dicoccoides37.2326.1390.05191forward
CNT3079298Dioscorea rotundataBrassica juncea16.7620.2488.3786forward
CNT30450547Dioscorea rotundataSaccharum spontaneum16.7627.6584.8886forward
CNT30131632Dioscorea rotundataLolium perenne11.3126.4889.6658forward
CNT30232947Dioscorea rotundataAnanas comosus12.6727.4387.6965forward
CNT30218729Dioscorea rotundataKalanchoe fedtschenkoi28.8551.0383.78148forward
CNT30214941Dioscorea rotundataHelianthus annuus17.5435.2986.6790forward
CNT30680173Dioscorea rotundataTriticum urartu9.7520.5810050forward
CNT30596194Dioscorea rotundataOryza meridionalis53.2262.7681.32273forward
CNT30355344Dioscorea rotundataLactuca sativa16.9629.183.9187forward
CNT30370054Dioscorea rotundataOryza glumipatula53.2252.281.32273forward
CNT30572629Dioscorea rotundataVitis vinifera12.4824.0687.564forward
CNT30109688Dioscorea rotundataOryza longistaminata53.2251.5181.32273forward
CNT30318651Dioscorea rotundataAsparagus officinalis15.423.386.0879forward
CNT30120547Dioscorea rotundataCitrus clementina10.9222.0587.556forward
CNT30148622Dioscorea rotundataBrachypodium distachyon13.0627.4691.0467forward
CNT30101372Dioscorea rotundataOryza rufipogon53.2236.2181.32273forward
CNT30576241Dioscorea rotundataOryza barthii53.2241.1881.32273forward
CNT30116534Dioscorea rotundataOryza nivara53.2263.1981.32273forward
CNT30176173Dioscorea rotundataVigna angularis13.2622.389.7168forward
CNT30113851Dioscorea rotundataFicus carica34.8964.6280.45179forward

Expression of CNT30331328

Peptides detected in this lncRNA

>peptide 1 (41 aa)
GGGEDGVDEDEGADDLANCPKQGHLPSEEQPECHCRVDVPT*

>peptide 2 (33 aa)
MISPIALNKDTFRARNSPNVTAGLMCPPENMKI*

Sequence

>CNT30331328
CGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGGTGCCGATGATCTCGCCAATTGCCCTAAACAAGGACACCTTCCGAGCGAGGAACAGCCCGAATGT
CACTGCCGGGTTGATGTGCCCACCTGAAAACATGAAAATTTAGTGTCAATTTGAAAAGCCTTTGTTTGATGAGTTTTAGGGTTTGGGAGAAGGAGGAGCA
GGACCTGAGATGCCGGCAGTGCAGTAGACGAGGATGAAGATCATGCCGCCAAAGGCCCAAGCGATGCCGAGAACGCCGACGCCGCCGCAGGCGTCGTTGG
CGGACTGATCTTTGTAGCCGATGACAGTGGCGACGGTGATGTAGAGGAAGAGGAGAGTGGCGATGAACTCGGCGATGAGAGCGCGGTAGAAGGACCAGAG
GGCGAACTCACCCATGTCGAGCAGAGGAGCTGGTGGTGGGTCGGTGTAGTCCTTCGCCGGTGGGTGCTCCGCCGCTTCGCTCACCTCTTTCGACATCTTT
GCTTTCTTTCTTC