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Detailed information on CNT3079298


BLAST search results

BLAST vs Swiss-Prot:
sp|P93004|PIP27_ARATH, E-value = 4e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671777Brassica junceaSetaria viridis14.1222.6488.3360forward
CNT30519732Brassica junceaSetaria italica18.1226.8384.4277forward
CNT30289517Brassica junceaTriticum aestivum20.4715.7387.3687forward
CNT30387764Brassica junceaTriticum turgidum20.479.8187.3687forward
CNT30568278Brassica junceaActinidia chinensis27.2923.5387.07116forward
CNT30586754Brassica junceaMusa acuminata14.1222.229060forward
CNT3085023Brassica junceaVigna radiata39.5334.7187.5168forward
CNT30435838Brassica junceaAegilops tauschii14.1224.186.6760forward
CNT30657898Brassica junceaTriticum dicoccoides20.4711.987.3687forward
CNT30450547Brassica junceaSaccharum spontaneum16.7122.8385.9271forward
CNT30131632Brassica junceaLolium perenne18.1235.1684.4277forward
CNT30653715Brassica junceaRosa chinensis4029.1686.47170forward
CNT30214941Brassica junceaHelianthus annuus3253.3383.09136forward
CNT30680173Brassica junceaTriticum urartu14.1224.6986.6760forward
CNT3035626Brassica junceaCucumis melo20.2415.3688.3786forward
CNT30331328Brassica junceaDioscorea rotundata20.2416.7688.3786forward
CNT30116611Brassica junceaOryza nivara11.5324.2689.849forward
CNT30113851Brassica junceaFicus carica15.5323.8387.8866forward

Expression of CNT3079298

Peptides detected in this lncRNA

>peptide 1 (46 aa)
VGRREDGVNEDESSNDLSPESSSFVVTIGHVNEDEDHTTEGPSDTE*

Sequence

>CNT3079298
GTCGGTCGCAGAGAAGACGGTGTAAACGAGGACGAAAGTTCCAATGATCTCAGCCCCGAGAGCAGTTCCTTTGTTGTAACCATCGGCCACGTAAACGAGG
ACGAAGATCATACCACCGAAGGCCCAAGCGATACCGAGTAAACCGACGCCGTCGCAAGGACCGGTTTGCTTCTTGTGGCCGATGACGGTGGCTATGGTGA
CGTAGAGGAAGAGGAGCGTGGCGATGAACTCGGCTATGAGAGCTCTGTAGAAAGACCATGACTTGAGCTCTCCCATGTCGAGGAACGGAGCTGGTGGAGG
GTCGACGTAGTCTTTCCCATGGCTCTGAGTGTGTCCCTCTTCGCTCACTTCTTTCGACATCTCTCTCTCTAAAGAAACCTTGAGTCTCTCTCTTCTCTCT
CTCTAGATAGGTATGGAGTTTGAGT