« Back to Aegilops tauschii search


Detailed information on CNT30440655


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 4e-138

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695933Aegilops tauschiiOryza sativa6061.2292.67600forward
CNT30671996Aegilops tauschiiSetaria viridis36.351.7892.84363forward
CNT30186674Aegilops tauschiiSecale cereale53.156.8594.54531forward
CNT30300533Aegilops tauschiiTriticum aestivum10097.9499.91000forward
CNT30587514Aegilops tauschiiMusa acuminata47.256.7389.83472forward
CNT30554984Aegilops tauschiiOryza glaberrima60.153.4791.51601forward
CNT30665158Aegilops tauschiiTriticum dicoccoides90.394.2697.45903forward
CNT30471514Aegilops tauschiiSaccharum spontaneum60.471.8289.9604forward
CNT3011490Aegilops tauschiiZea mays60.667.6389.6606forward
CNT30129909Aegilops tauschiiCorymbia citriodora53.87489.03538forward
CNT30684955Aegilops tauschiiTriticum urartu96.497.1897.1964forward
CNT30722028Aegilops tauschiiTriticum spelta48.261.3299.79482forward
CNT30345513Aegilops tauschiiEragrostis tef36.839.6691.85368forward
CNT30363113Aegilops tauschiiSorghum bicolor53.454.2192.7534forward
CNT30369334Aegilops tauschiiOryza glumipatula59.563.192.94595forward
CNT30150713Aegilops tauschiiBrachypodium distachyon32.455.4892.59324forward
CNT30103465Aegilops tauschiiOryza rufipogon6052.492.67600forward
CNT30117623Aegilops tauschiiOryza nivara6062.9692.5600forward
CNT30603498Aegilops tauschiiOryza punctata52.957.593.95529forward

Expression of CNT30440655

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 2 (29 aa)
MAQRQWITSSSRFLAKVSGSADRPAVSQP*

>peptide 3 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSAKASGSSARPRGSKLPPG*

>peptide 4 (52 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLASFASGELRLTVGL*

Sequence

>CNT30440655
AACCAAGGAGTTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTC
CTCATCTCGAATCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGC
ATCCATCAGCCATGAAGTTGTCGGCCTAGAGGTTGAGCTGACTGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGG
GGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTT
CTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGTCGAGGCCGCCCTCGCTG
AAGATCTGGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCCGGGAAGACGCAGCCGAGCGCGCCGAGCATGG
CCCAACGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGGCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTC
GCCGGTGAGGTAGCTCGGCGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTG
CCCGCCGTCTTGCGCATGGTGATGCGGCCCTCCCCGAAGGGCGCCGCCCTGGAGGCCTTCACAGGTGTGCCCGCCATCGCCGGGGAGGAGAGCGCCATGG
TCGCGGCCGCCATCGCGCGCTGCGTACTCGCTAGCTTTGCTTCGGGCGAGCTGAGGCTGACAGTAGGACTGTAGGAGGCGCTGGTGGTCGTTGGAGCTGT