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Detailed information on CNT30150713


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 1e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696234Brachypodium distachyonOryza sativa72.2646.5887.91422forward
CNT30671996Brachypodium distachyonSetaria viridis54.7945.6592.5320forward
CNT30186674Brachypodium distachyonSecale cereale63.5339.7292.45371forward
CNT30298565Brachypodium distachyonTriticum aestivum76.251.4591.91445forward
CNT30393694Brachypodium distachyonTriticum turgidum63.5338.3394.34371forward
CNT30554869Brachypodium distachyonOryza glaberrima72.2643.7887.91422forward
CNT30440655Brachypodium distachyonAegilops tauschii55.4832.492.59324forward
CNT30251387Brachypodium distachyonAvena sativa63.5335.7196.23371forward
CNT30664564Brachypodium distachyonTriticum dicoccoides63.5339.2694.61371forward
CNT30473163Brachypodium distachyonSaccharum spontaneum61.1330.3891.32357forward
CNT3013856Brachypodium distachyonZea mays63.5334.8792.45371forward
CNT30129909Brachypodium distachyonCorymbia citriodora58.3946.9189.74341forward
CNT30684601Brachypodium distachyonTriticum urartu63.5338.6194.34371forward
CNT30721831Brachypodium distachyonTriticum spelta55.1438.0294.72322forward
CNT30108136Brachypodium distachyonOryza longistaminata73.853.8187.7431forward
CNT30603457Brachypodium distachyonOryza punctata61.6437.5491.94360forward

Expression of CNT30150713

Peptides detected in this lncRNA

>peptide 1 (44 aa)
ISDFHMQHLSVLTPDSISTHAAASIINNDVVGQAPQHRAGAGAC*

Sequence

>CNT30150713
ATCTCTGACTTTCACATGCAACATCTATCAGTCCTGACTCCTGACTCAATCTCGACACATGCAGCAGCATCCATCATCAACAATGACGTCGTCGGCCAAG
CGCCTCAGCATAGAGCAGGCGCTGGAGCTTGCTAACTAAGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTCACTGGGTCGG
ACAGGTGGTCGGCCAGGCCCAGATGGCAAGGATGCTCTGGGCGTGGACAAGGCTGGGGTTGCCGAGGTAGTCAAGGCCTCCCTCGCTGAAGATCTGGGAG
CCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGGGCACCAAGCATAGCCCAGCGGCAGT
GGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGCCCGGCGGTGTCCCAGCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTA
GCTCGGGGGCTCGCCGGAGAGTGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCCGGACGCGGACACCTTGGG