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Detailed information on CNT30471514

BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 2e-136

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696274	Saccharum spontaneum	Oryza sativa	71.7	61.72	90.88	603	forward
CNT30299998	Saccharum spontaneum	Triticum aestivum	71.82	59.51	89.07	604	forward
CNT30554984	Saccharum spontaneum	Oryza glaberrima	71.7	53.65	91.04	603	forward
CNT30440655	Saccharum spontaneum	Aegilops tauschii	71.82	60.4	89.9	604	forward
CNT30665325	Saccharum spontaneum	Triticum dicoccoides	71.82	69.51	92.22	604	forward
CNT3011490	Saccharum spontaneum	Zea mays	81.69	76.67	95.05	687	forward
CNT30684955	Saccharum spontaneum	Triticum urartu	71.82	60.89	90.07	604	forward
CNT30596906	Saccharum spontaneum	Oryza meridionalis	65.64	56.38	92.39	552	forward
CNT30103465	Saccharum spontaneum	Oryza rufipogon	71.7	52.66	90.38	603	forward
CNT30582730	Saccharum spontaneum	Echinochloa crusgalli	82.4	43.75	93.65	693	forward
CNT30117623	Saccharum spontaneum	Oryza nivara	71.7	63.27	90.22	603	forward
CNT30556492	Saccharum spontaneum	Panicum hallii	66.11	60.63	90.47	556	forward

Expression of CNT30471514

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQREWITSSSRFLANVSGSADSPAVSQP*

>peptide 2 (46 aa)
MAWTKNPNMENMARRPFLSSFTLSSAKASGSSARMLCAWIRLGLPR*

Sequence

>CNT30471514
ATAAAGGAAAAGAATGAGCCGTGGACGCCGCGCGAGATAATGAACACAATTATTCCTTCTTGATTGAACCCTGGTAATTTACATCATGGTACAAACTGAA
ACCAGTGCGCGCTCACATGCATCCGGACATCTCCCTCACTTGCCGGGCACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGT
GGTCGGCGAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTT
CACCTTGAGCTCGGCGAAGGCCTCGGGGTCGTCGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCCAGGTAGTCAAGCCCGCCCTCGCTGAAG
ATCTGCGAACCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAACACGCAGCCGAGCGCGCCCAGCATGGCCC
AGCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCGGGGTCCGCGGACAGCCCAGCTGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCC
CGTCAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCCAGGTAGAGCACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCCGCCGGCTTGGCCTTC
GCCGCCGTCTTGCGCATCGTCACGCGGGCCTCGCCGAACAGGGACGACGGCACGTTCACGGCCTTGCCGGCGAAGGCCGTGGAGGAGAGGGCCATGGTGC
TGCTCGCCATTGCGCTGCTTCTGCTTTGCACTGGTTTAAGT