Detailed information on CNT30103465


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 1e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695933Oryza rufipogonOryza sativa85.59100100980forward
CNT30300533Oryza rufipogonTriticum aestivum52.458.7792.5600forward
CNT30393445Oryza rufipogonTriticum turgidum40.5259.2687.72464forward
CNT30587514Oryza rufipogonMusa acuminata48.0366.1188550forward
CNT30554984Oryza rufipogonOryza glaberrima90.0491.7398.551031forward
CNT30440655Oryza rufipogonAegilops tauschii52.46092.67600forward
CNT30251114Oryza rufipogonAvena sativa52.5857.6188.87602forward
CNT30665158Oryza rufipogonTriticum dicoccoides52.462.6391.5600forward
CNT30471514Oryza rufipogonSaccharum spontaneum52.6671.790.38603forward
CNT3011490Oryza rufipogonZea mays52.7567.4190.07604forward
CNT30129909Oryza rufipogonCorymbia citriodora47.1674.2887.78540forward
CNT30684955Oryza rufipogonTriticum urartu52.460.4892600forward
CNT30363113Oryza rufipogonSorghum bicolor46.8154.4289.55536forward
CNT30371011Oryza rufipogonOryza glumipatula57.29100.9297.71656forward
CNT30117623Oryza rufipogonOryza nivara76.2491.6199.77873forward
CNT30603498Oryza rufipogonOryza punctata46.4657.8393.61532forward

Expression of CNT30103465

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVIFWDRGSICFRSNRDEKSANQNNTTDKYLDH*

>peptide 2 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

>peptide 3 (78 aa)
FNPLNQRIHYLPRFDPIYCIRKFKVLINPSMPQYKQFRLHIYTIHSQKWLYFGIEGVFVSDLIEMRNPLIRITPRIST*

>peptide 4 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

Sequence

>CNT30103465
TTTTAACCCACTAAATCAGAGGATCCATTATCTTCCTAGATTCGACCCAATCTATTGTATACGTAAATTTAAAGTACTAATTAATCCTTCCATGCCACAA
TATAAACAATTTAGACTACATATTTATACTATACATAGCCAGAAATGGTTATATTTTGGGATCGAGGGAGTATTTGTTTCCGATCTAATAGAGATGAGAA
ATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTC
TTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACC
ACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTG
GTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTC
ACCTTGAGCTCCGCGAACGCCTCGGGGTCATCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGC
CCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTG
GATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAG
CTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCT
TGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCAT
TGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAG