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Detailed information on CNT30363113

BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 4e-124

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696274	Sorghum bicolor	Oryza sativa	54.42	54.86	89.55	536	forward
CNT30300533	Sorghum bicolor	Triticum aestivum	54.21	52.3	92.7	534	forward
CNT30587514	Sorghum bicolor	Musa acuminata	48.22	57.09	87.16	475	forward
CNT30554984	Sorghum bicolor	Oryza glaberrima	54.42	47.69	89.74	536	forward
CNT30440655	Sorghum bicolor	Aegilops tauschii	54.21	53.4	92.7	534	forward
CNT30251114	Sorghum bicolor	Avena sativa	62.34	58.76	90.23	614	forward
CNT30664970	Sorghum bicolor	Triticum dicoccoides	53.5	63.04	92.79	527	forward
CNT3013606	Sorghum bicolor	Zea mays	61.22	58.6	94.03	603	forward
CNT30129909	Sorghum bicolor	Corymbia citriodora	48.83	66.16	89.4	481	forward
CNT30684955	Sorghum bicolor	Triticum urartu	54.21	53.83	92.88	534	forward
CNT30596906	Sorghum bicolor	Oryza meridionalis	50.15	50.46	89.47	494	forward
CNT30369242	Sorghum bicolor	Oryza glumipatula	56.35	57.28	89.19	555	forward
CNT30103465	Sorghum bicolor	Oryza rufipogon	54.42	46.81	89.55	536	forward
CNT30581184	Sorghum bicolor	Echinochloa crusgalli	53.81	59.48	93.77	530	forward
CNT30117623	Sorghum bicolor	Oryza nivara	54.42	56.24	89.37	536	forward
CNT30603498	Sorghum bicolor	Oryza punctata	55.74	59.67	90.89	549	forward
CNT30556492	Sorghum bicolor	Panicum hallii	89.34	95.97	90.68	880	forward

Expression of CNT30363113

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MAWTKKPNMENMARRPFLSSFTLSSAKASGSSARPRGSKLGLPR*

>peptide 2 (37 aa)
MVMRPSPKEPTLMGVPAIAVEEIDMVEAAIDEQTLRA*

>peptide 3 (30 aa)
MQRETRDTHAANLQHQSIHVRPLRKDNGVA*

>peptide 4 (29 aa)
MAQREWITSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30363113
CCTAGAGCTAGGAAGTACTATAAAAACAGCAGAAAGCATCGCAGACGAACAAATTAATGGATGACCTTAATCTGACAAATCAATAATTAACCACCGGGAA
ACAAAACCACAACTACTATTGCACAAGCATCGTTCGTCTTAGTGTACAACGCCAACTCATCATCATCTCGACTTGCCCCCTGAAATGCAACGTGAAACAA
GAGACACACATGCAGCTAACTTGCAGCATCAATCAATCCACGTACGCCCTCTCCGAAAAGACAATGGAGTTGCATAGCCAACTGAGCAGCTGATGAGCTT
AGTTGCCGGGGACGAAGTTGGTGGTCAGCGAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGA
GGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGCCTCGGGATCGTCGGCCAGGCCGAGGGGGTCGAAGCTGGGGTTGCCCAGGTAGTCCAG
GCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGC
GCGCCCAGCATGGCCCAGCGGGAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCCGTAGT
CGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGTCGGGCCCGTACCAGGGACTGCCGGACGCCGC
CACCTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGAGCCCACCTTGATGGGGGTGCCGGCCATCGCCGTGGAGGAGATCGAC
ATGGTGGAGGCGGCCATTGATGAGCAAACTCTGCGAGCGTGAGAGTGTTGGACCGGTTGCTAGCTGCTGCTGCTGCTGCTGGTGG