« Back to Triticum spelta search


Detailed information on CNT30722028


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30300533Triticum speltaTriticum aestivum63.4948.87100499forward
CNT30224983Triticum speltaHordeum vulgare44.7857.798.3352forward
CNT30440655Triticum speltaAegilops tauschii61.3248.299.79482forward

Expression of CNT30722028

SRR9114152: 660.61 RPKM

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLASFASGELRLTVGL*

>peptide 2 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 3 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSAKASGSSARPRGSKLPPG*

>peptide 4 (31 aa)
LDFQRNIHRTSAFDIQRFRETKELSRRTEMP*

Sequence

>CNT30722028
CTTGGACTTTCAGAGAAACATTCATAGAACTTCTGCATTTGACATTCAGAGGTTCAGAGAAACCAAGGAGTTAAGCAGAAGAACAGAGATGCCTTGATTA
ATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGAATCGCCCTCACATGCAACATCTATCAGTCC
GGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGGTTGAGCTG
ACTGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCAAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTT
GCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGG
TCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCG
CCGTCTTGCGCATGGTGATGCGGCCCTCCCCGAAGGGCGCCGCCCTGGAGGCCTTCACAGGTGTGCCCGCCATCGCCGGGGAGGAGAGCGCCATGGTCGC
GGCCGCCATCGCGCGCTGCGTACTCGCTAGCTTTGCTTCGGGCGAGCTGAGGCTGACAGTAGGACTGTAGGAGGCGCTGGTGGTCG