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Detailed information on CNT30300533


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 5e-138

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695933Triticum aestivumOryza sativa58.7761.2292.5600forward
CNT30393906Triticum aestivumTriticum turgidum46.3365.7998.73473forward
CNT30587514Triticum aestivumMusa acuminata46.2356.7389.83472forward
CNT30440655Triticum aestivumAegilops tauschii97.9410099.91000forward
CNT3011490Triticum aestivumZea mays59.3567.6389.77606forward
CNT30684955Triticum aestivumTriticum urartu94.4297.1896.99964forward
CNT30722028Triticum aestivumTriticum spelta48.8763.49100499forward
CNT30363113Triticum aestivumSorghum bicolor52.354.2192.7534forward
CNT30369334Triticum aestivumOryza glumipatula58.2863.192.94595forward
CNT30103465Triticum aestivumOryza rufipogon58.7752.492.5600forward
CNT30117623Triticum aestivumOryza nivara58.7762.9692.33600forward
CNT30603498Triticum aestivumOryza punctata51.8157.593.95529forward

Expression of CNT30300533

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWITSSSRFLAKVSGSADRPAVSQP*

>peptide 2 (52 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLASFASGELRLTVGL*

>peptide 3 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 4 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSAKASGSSARPRGSKLPPG*

Sequence

>CNT30300533
ATTCAGAGGTTCAGAGAAACCAAGGAGTTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAG
TGTACACACACCAACTCCTCATCTCGAATCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGAC
GACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGGTTGAGCTGACTGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCA
GGCGTTGTTGTTGACGGGGTCGGCAAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAAC
ATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGT
CGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCCGGGAAGACGCAGCC
GAGCGCGCCGAGCATGGCCCAACGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGGCCCGCGGTGTCCCAGCCG
TAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGCGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACG
CCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCCCCGAAGGGCGCCGCCCTGGAGGCCTTCACAGGTGTGCCCGCCATCGCCGG
GGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTACTCGCTAGCTTTGCTTCGGGCGAGCTGAGGCTGACAGTAGGACTGTAGGAGGCGCTG
GTGGTCGTTGGAGCTGTGGAG