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Detailed information on CNT30117623

BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 7e-121

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695933	Oryza nivara	Oryza sativa	91.61	89.08	99.77	873	forward
CNT30300533	Oryza nivara	Triticum aestivum	62.96	58.77	92.33	600	forward
CNT30587514	Oryza nivara	Musa acuminata	57.71	66.11	88	550	forward
CNT30554984	Oryza nivara	Oryza glaberrima	100.1	84.88	98.43	954	forward
CNT30440655	Oryza nivara	Aegilops tauschii	62.96	60	92.5	600	forward
CNT30251114	Oryza nivara	Avena sativa	63.17	57.61	88.7	602	forward
CNT30665158	Oryza nivara	Triticum dicoccoides	62.96	62.63	91.33	600	forward
CNT30471514	Oryza nivara	Saccharum spontaneum	63.27	71.7	90.22	603	forward
CNT3011490	Oryza nivara	Zea mays	63.38	67.41	89.9	604	forward
CNT30129909	Oryza nivara	Corymbia citriodora	56.66	74.28	87.78	540	forward
CNT30684955	Oryza nivara	Triticum urartu	62.96	60.48	91.83	600	forward
CNT30363113	Oryza nivara	Sorghum bicolor	56.24	54.42	89.37	536	forward
CNT30103465	Oryza nivara	Oryza rufipogon	91.61	76.24	99.77	873	forward
CNT30603498	Oryza nivara	Oryza punctata	55.82	57.83	93.42	532	forward

Expression of CNT30117623

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

Sequence

>CNT30117623
AGTATTTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAAAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACGAATAAAATCATT
ATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGAC
AACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCC
CAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGA
ACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCATCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTA
GTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAA
CCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACC
CGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGA
CGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGAT
GCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAGTGTGAGTT