Detailed information on CNT30603498


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 7e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695933Oryza punctataOryza sativa57.8354.2993.61532forward
CNT30300533Oryza punctataTriticum aestivum57.551.8193.95529forward
CNT30587514Oryza punctataMusa acuminata50.9856.3787.42469forward
CNT30554984Oryza punctataOryza glaberrima57.9347.4292.5533forward
CNT30440655Oryza punctataAegilops tauschii57.552.993.95529forward
CNT30251666Oryza punctataAvena sativa58.4852.7591.08538forward
CNT30665158Oryza punctataTriticum dicoccoides57.555.2292.06529forward
CNT30473739Oryza punctataSaccharum spontaneum59.1372.3488.6544forward
CNT3011490Oryza punctataZea mays58.860.3887.8541forward
CNT30129909Oryza punctataCorymbia citriodora51.7465.4788.45476forward
CNT30684955Oryza punctataTriticum urartu57.553.3393.01529forward
CNT30363113Oryza punctataSorghum bicolor59.6755.7490.89549forward
CNT30369242Oryza punctataOryza glumipatula96.291.3391.53885forward
CNT30103465Oryza punctataOryza rufipogon57.8346.4693.61532forward
CNT30117623Oryza punctataOryza nivara57.8355.8293.42532forward

Expression of CNT30603498

Peptides detected in this lncRNA

>peptide 1 (64 aa)
SEPAQKYTLPVQISPFPLSNTRTSTRSTRIRTSIRYTFVHLLYRVHTRTLSLSLMQSRDASSSS*

>peptide 2 (65 aa)
QNLHRNTHYRYRSHHSPSRILVHPRGPHEYVHLYGTRSYIYCTAYTHAHSLSLSCRAETHRRLAS*

>peptide 3 (76 aa)
MRGHGSTAAAAALTCRGRSWWSARFSRGPLPVTMAWTKNPNMENMARRPFLISFTLSSAKASGSSARPSGSKLPPG*

>peptide 4 (31 aa)
MVMRPSPNTLAAALPARAGEERAMVAAAMSS*

>peptide 5 (62 aa)
RTCTEIHTTGTDLTIPPLEYSYIHAVHTNTYIYTVHVRTSTVPRTHTHTLSLSHAEQRRIVV*

>peptide 6 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

Sequence

>CNT30603498
TCAGAACCTGCACAGAAATACACACTACCGGTACAGATCTCACCATTCCCCCTCTCGAATACTCGTACATCCACGCGGTCCACACGAATACGTACATCTA
TACGGTACACGTTCGTACATCTACTGTACCGCGTACACACACGCACACTCTCTCTCTCTCTCATGCAGAGCAGAGACGCATCGTCGTCTAGCTAGCTAGC
TAAGCTAGCTGAAGGCGATGCGTGGCCATGGCAGCACGGCGGCGGCGGCGGCGCTCACTTGCCGGGGACGAAGTTGGTGGTCGGCGAGGTTCTCGAGGGG
GCCCTTGCCGGTGACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAAGGCC
TCGGGGTCGTCGGCGAGGCCGAGTGGGTCGAAGCTGCCGCCGGGGTAGTCGAGGCCACCCTCGCTGAAGATCTGGGAGCCCGCCTTGAACCACACGGCCT
CGCCGAACTTGACGCCGTTGCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCACCTGCAGTGGATCACCTCCAGCTCGCGGTT
CTTGGCGAACGTCTCCGGGTCAGCGGAGAGGCCGGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGTGGCTCGCCGGAGAGC
GGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTGCCCGACGCGGACGGCTTGGGCTTGGCAGCCGACTTGCGCATGGTGATGCGGCCCTCGC
CGAACACCTTGGCGGCGGCCTTGCCGGCGAGAGCCGGGGAGGAGAGGGCCATGGTGGCGGCGGCCATGTCTAGCTAGCTCTAGCTCGCTCTGCTGCTGCT
GCTGCTGCTGGGTGTGTGCG