Detailed information on CNT3011490


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 2e-133

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696274Zea maysOryza sativa67.4161.8290.4604forward
CNT30300533Zea maysTriticum aestivum67.6359.3589.77606forward
CNT30587514Zea maysMusa acuminata60.7165.3885.48544forward
CNT30554984Zea maysOryza glaberrima67.4153.7490.56604forward
CNT30440655Zea maysAegilops tauschii67.6360.689.6606forward
CNT30665325Zea maysTriticum dicoccoides67.6369.7490.92606forward
CNT30471514Zea maysSaccharum spontaneum76.6781.6995.05687forward
CNT30129909Zea maysCorymbia citriodora60.7174.8390.07544forward
CNT30684955Zea maysTriticum urartu67.6361.0988.78606forward
CNT30345519Zea maysEragrostis tef39.2960.6994.89352forward
CNT30368027Zea maysSorghum bicolor54.0245.6294.63484forward
CNT30596906Zea maysOryza meridionalis61.6156.3891.85552forward
CNT30108136Zea maysOryza longistaminata39.7344.4493.54356forward
CNT30103465Zea maysOryza rufipogon67.4152.7590.07604forward
CNT30582730Zea maysEchinochloa crusgalli77.2343.6991.62692forward
CNT30117623Zea maysOryza nivara67.4163.3889.9604forward
CNT30603498Zea maysOryza punctata60.3858.887.8541forward

Expression of CNT3011490

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVQTENQRALTCIRTPKGHRRRLPHLPGTKLVA*

>peptide 2 (29 aa)
MAQREWITSSSRFLANVSGSADSPAVSQP*

>peptide 3 (60 aa)
MWSARFSSGPFPVTMAWTKNPNMENMARRPFLSSLTLSSAKASGSSARMLCAWMRLGFPR*

>peptide 4 (42 aa)
GRNEKERGKIMTMNTIIPCRLNNSLHHGTNRKPACAHMHPDT*

Sequence

>CNT3011490
CGGCAGGAACGAAAAAGAGAGGGGAAAAATAATGACAATGAACACAATTATTCCTTGTCGATTGAACAATAGTTTACATCATGGTACAAACCGAAAACCA
GCGTGCGCTCACATGCATCCGGACACCTAAAGGTCACCGGCGGCGCCTCCCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAAGCGTTGTTGTTG
ACGGGGTCGGCAATGTGGTCAGCGAGGTTCTCGAGCGGGCCCTTCCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGC
CGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGAAGGCCTCGGGGTCGTCGGCGAGGATGCTCTGCGCGTGGATGAGGCTCGGGTTCCCGAGGTAGTCCAG
CCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGAAGCTCCGGGAAGACGCAGCCGAGC
GCGCCCAGCATGGCCCAGCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCCGCCGACAGCCCCGCGGTGTCCCAGCCGTAGT
CGCCCGGGAACTCGCCCGTCAGGTAGCTCGGCGGCTCGCCGGACAGTGGGCCCAGGTACAGCACGCGGTCGGGGCCGTACCACGGGCTCCCGGACGCCGC
CGCTGGCTTGGCCTTCGCCGCCGTCTTGCGCATCGTCACGCGGGCCTCGCCGAAGGCGGACGACGACGGCACGTTCACGGCCTTGCCGGCGAAGGCCGTG
GAGGAGAGGGCCATGGTGCTGCTCGCCATTGCGGCTGCTTTTTTTATTGCACTGCTACGTAGCGAGACTTGCAGATCGATGGTGGCTTGAGATGCT