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Detailed information on CNT30426485


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FNB0|CHLH_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONPOPT001712, E-value = 4e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676056Papaver somniferumSetaria viridis21.8730.7682.6362forward
CNT30524187Papaver somniferumSetaria italica30.7677.9580.75509forward
CNT30641519Papaver somniferumNymphaea colorata22.2441.5383.7368forward
CNT30513968Papaver somniferumJuglans regia14.3858.3382.77238forward
CNT30524804Papaver somniferumPhaseolus vulgaris11.1224.0579.35184forward
CNT30710265Papaver somniferumGlycine max19.0369.0881.27315forward
CNT3084561Papaver somniferumVigna radiata13.8438.6881.22229forward
CNT30552959Papaver somniferumOryza glaberrima4.0530.8888.0667forward
CNT30248818Papaver somniferumAvena sativa9.8524.1181.6163forward
CNT30659481Papaver somniferumTriticum dicoccoides16.865.7283.09278forward
CNT30133288Papaver somniferumLolium perenne17.1640.1183.1284forward
CNT30347532Papaver somniferumEragrostis tef14.6246.3678.51242forward
CNT30619939Papaver somniferumCajanus cajan23.4446.0879.38388forward
CNT3031792Papaver somniferumTheobroma cacao16.2566.7581.78269forward
CNT30328631Papaver somniferumAsparagus officinalis4.1127.6489.7168forward
CNT3036031Papaver somniferumCucumis melo8.8224.2583.56146forward
CNT30585285Papaver somniferumEchinochloa crusgalli18.9742.4381.21314forward
CNT30603839Papaver somniferumOryza punctata30.8231.2580.98510forward

Expression of CNT30426485

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLTNVATASIADGGSPITCKPHGRSLDSISMIFA*

>peptide 2 (33 aa)
MSSMLQIHGVGLQIWRRGDASDHLHIRMWVELQ*

>peptide 3 (44 aa)
MVWACRFGEEETHRITFISECGLNSNKNIAVLLSVDQEVLTIRI*

>peptide 4 (43 aa)
KTPEQFTTTSTLGRPSSSRLIGSTLLTRPTESAIGLTPIREST*

>peptide 5 (35 aa)
MPLLSGVVARRPSVYLCHFLCRYLRFSFLLSQLIK*

>peptide 6 (34 aa)
MNVFPSWQNFRIPNGIPTRTWFNITTLQSLFQGS*

>peptide 7 (54 aa)
MPNPRIVVNLSETSTTWPFSFVVCSTKDDIAPLDASVIWRSSSTSFSIPLSLPL*

>peptide 8 (49 aa)
MLSVPHKTSATVSGYFPPFSSFCLSNSLSTTIIALCMAASVGIDCGSNA*

>peptide 9 (45 aa)
NSRTVYDNINPWSSKLFEADWFYLVNTSNRIRNRSHPDQRKHLTQ*

Sequence

>CNT30426485
AAAACTCCAGAACAGTTTACGACAACATCAACCCTTGGTCGTCCAAGCTCTTCGAGGCTGATTGGTTCTACCTTGTTAACACGTCCAACAGAATCCGCAA
TAGGTCTCACCCCGATCAGAGAAAGCACTTGACCCAATGATTCTCCGTAGGTCTTGATGTTATCAGTTCCCCACAAAACAAGTGCAACTGTTTCAGGATA
CTTTCCCCCATTTTCAAGTTTCTGCCTCTCCAATAGCCTTTCCACCACTATCATTGCACTCTGCATGGCTGCCTCTGTTGGAATAGACTGTGGGTCCAAT
GCATGAATGTTTTTCCCAGTTGGCAAAACTTTAGGATTCCTAATGGGATCCCCACCAGGACCTGGTTCAACATAACTACCCTCCAGAGCTTGTTTCAAGG
CTCCTAGTTCGTTATCAGCCACCACTAGTTTCAAGCACTCACCTAAGTACTCAAACAAGGTTCTAAGCTTGGTCCTATCAGCCCTGTAAAACTTAGTGTC
TGATAAGTACTGAATCCATGGCTCGTTGATGCCGAACCCAAGAATTGTGGTTAATTTATCAGAGACATCGACCACCTGGCCTTTTTCATTTGTAGTCTGC
TCCACGAAGGATGATATAGCTCCCCTTGATGCCTCTGTTATCTGGCGTAGTAGCTCGACGTCCTTCAGTATACCTTTGTCACTTCCTCTGTAGATATCTT
CGATTTTCCTTCCTACTGTCTCAGCTAATAAAGTAGGCAGTGATATTATCCCTTCTTCTGGGCGATCCAAAGCAGCAATGTTAACTAATGTTGCCACTGC
CTCGATTGCAGATGGTGGCTCACCGATAACATGTAAACCACATGGCAGAAGCCTAGATTCGATCTCCATGATCTTTGCATAACACTTTCCAACAACAAGG
TCTCTATCTGCAGCCGACAGGTCCGTGCCTTCTTCAGGAAGATTCACATCCTTGTCCAGATTGCATTGTTTTGCTGTACTGATGATGGAGTTCACAATTT
GAGGTCCACGTCCGGTGTCTTTCAGTGACTGATACGAAGCGATCAGCTCCCCGAGCTGTTTCAAACCCTTGTAGAGACCAGCATTTTCTGCTGGAGGGGT
TAGATAACTGATGGTGTTTGCGTAACTACGACGTTTGGCTATGGTAGCCTCAGAAGGATTGTTTGCTGCATAATAGTAAATGTTGGGAATGTTCCCAATA
AGACTGTCGGGGTAGCAAACATCACTCATCCCCACTTGTTTCCCAGGCATGAACTCAAGTGATCCGTGGGTTCCGAAGTGAAGTACAGCATCTGCTTTGA
AAACTTTCTCGACAAATGAGTAGTATGCTGCAAATCCATGGTGTGGGCTTGCAGATTTGGAGAAGAGGAGACGCATCGGATCACCTTCATATCCGAATGT
GGGTTGAACTCCAATAAAAACATTGCCGTACTGCTTTCCGTAGACCAGGAGGTTCTCACCATCAGAATTTAGATTACCAGGAGGCTTACCCCAACTCTCT
TCCAATGCTTGAGAGTAAGGAGTGAGCTTCTGGTACTCACGGACACCCATCTTGTAGGCGACATTGAGATTTGGGTAAGCAGCAGTTCCAACATTTCCTT
TGTCCGGCGGGAAGCTGAAAACGGTGATTGCTAGCTTCTTCTCTGCCTGCATTTT