Detailed information on CNT30248818


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 8e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676548Avena sativaSetaria viridis21.7565.9289.12147forward
CNT30712554Avena sativaGlycine max16.7230.7983.19113forward
CNT30552959Avena sativaOryza glaberrima17.015393.04115forward
CNT30133288Avena sativaLolium perenne40.6838.8496275forward
CNT30619939Avena sativaCajanus cajan31.3625.1878.77212forward
CNT30426485Avena sativaPapaver somniferum24.119.8581.6163forward
CNT3031792Avena sativaTheobroma cacao12.4320.8483.3384forward
CNT3036031Avena sativaCucumis melo32.436.3880.37219forward
CNT30575700Avena sativaOryza barthii46.8937.9288.64317forward
CNT30585285Avena sativaEchinochloa crusgalli21.892086.49148forward

Expression of CNT30248818

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLSVPHKTSAIVSGYLPPLSAFCRSSRRSTTILALFMAAAVGIDCGS*

>peptide 2 (72 aa)
MLSVPHKTSAIVSGYLPPLSAFCRSSRRSTTILALFMAAAVGIDCGSRAWMFFPVGRTFGLRMGSPPGPGST*

>peptide 3 (55 aa)
LMKRSLNTPEQLTTTSTLGRPSSSMLTGSTRLTRPRPSVTGSTPSIQNTWANDSP*

>peptide 4 (69 aa)
MDVLPCWENLWVTDGITTRARLNIASLKGKLQGSQLIVCHNQLQALSQESKQGPQLLSIRPDELGRGQVL

Sequence

>CNT30248818
GGTTGATGAAAAGATCTCTGAACACGCCCGAGCAGTTGACAACGACATCAACCCTAGGACGTCCTAGCTCCTCAATGCTGACAGGCTCCACACGGTTGAC
ACGGCCAAGGCCATCAGTAACCGGCTCCACACCAAGCATCCAGAACACCTGGGCCAATGACTCGCCGTAGGTCTTGATGTTGTCAGTACCCCACAAGACA
AGTGCAATTGTCTCAGGATACTTGCCACCATTGTCAGCCTTTTGCCGCTCCAGCAGACGTTCCACAACAATCTTGGCACTCTTCATGGCAGCTGCGGTCG
GAATTGACTGTGGGTCTTGATGTTGTCAGTACCCCACAAGACAAGTGCAATTGTCTCAGGATACTTGCCACCATTGTCAGCCTTTTGCCGCTCCAGCAGA
CGTTCCACAACAATCTTGGCACTCTTCATGGCAGCTGCGGTCGGGATTGACTGTGGGTCGAGAGCATGGATGTTCTTCCCTGTTGGGAGAACCTTTGGGT
TACGGATGGGATCACCACCAGGGCCAGGCTCAACATAGCTTCCCTCAAGGGCAAGCTTCAAGGCTCCCAGCTCATTGTCTGCCACAATCAGCTTCAGGCA
CTCTCCCAGGAATCCAAACAAGGTCCTCAGCTTCTCTCTATCCGCCCTGATGAACTTGGTCGTGGACAAGTACTCC