Detailed information on CNT30552959


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 5e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514102Oryza glaberrimaJuglans regia35.028.5286.8476forward
CNT30248818Oryza glaberrimaAvena sativa5317.0193.04115forward
CNT30133288Oryza glaberrimaLolium perenne5316.2489.57115forward
CNT30426485Oryza glaberrimaPapaver somniferum30.884.0588.0667forward
CNT3031792Oryza glaberrimaTheobroma cacao29.9516.1387.6965forward
CNT3036031Oryza glaberrimaCucumis melo35.0212.6288.1676forward
CNT30575876Oryza glaberrimaOryza barthii53.9218.43100117forward
CNT30585285Oryza glaberrimaEchinochloa crusgalli29.958.7889.2365forward

Expression of CNT30552959

Peptides detected in this lncRNA

>peptide 1 (68 aa)
LDVIGAPQDKCNCLRILATIVNLLPLQQTVYNNFGALQAFSQESKQGSQFLSVCSDELGLGQVLYPWF*

>peptide 2 (71 aa)
VLMLSVPHKTSAIVSGYLPPLSTFCRSSRRSTTILALFKHSPKKVNKVLNFSLSALMNLVLDKCCTHGSDKP

Sequence

>CNT30552959
GTCTTGATGTTATCGGTGCCCCACAAGACAAGTGCAATTGTCTCAGGATACTTGCCACCATTGTCAACCTTTTGCCGCTCCAGCAGACGGTCTACAACAA
TTTTGGCGCTCTTCAAGCATTCTCCCAAGAAAGTAAACAAGGTTCTCAATTTCTCTCTGTCTGCTCTGATGAACTTGGTCTTGGACAAGTGTTGTACCCA
TGGTTCTGATAAACCAA