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Detailed information on CNT30524187


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 2e-131

BLAST vs NONCODE:
NONPOPT001712, E-value = 1e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641519Setaria italicaNymphaea colorata57.5842.4481.38376forward
CNT30513968Setaria italicaJuglans regia36.7558.8283.75240forward
CNT30524804Setaria italicaPhaseolus vulgaris29.5625.2380.31193forward
CNT30710265Setaria italicaGlycine max49.6271.0581.79324forward
CNT3084561Setaria italicaVigna radiata35.0738.6881.66229forward
CNT30659481Setaria italicaTriticum dicoccoides46.5571.8791.45304forward
CNT30133288Setaria italicaLolium perenne60.1855.5190.33393forward
CNT3017824Setaria italicaZea mays39.9759.3292.34261forward
CNT30347532Setaria italicaEragrostis tef37.9847.5193.15248forward
CNT30426485Setaria italicaPapaver somniferum77.9530.7680.75509forward
CNT30575700Setaria italicaOryza barthii31.8524.8892.79208forward
CNT30585285Setaria italicaEchinochloa crusgalli48.3942.797.15316forward
CNT30603839Setaria italicaOryza punctata10040.0192.5653forward

Expression of CNT30524187

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MCAEVENSISLEDLLNKGVVCCKAMVRAGRL*

>peptide 2 (30 aa)
MLQSHGEGWQTLRTEAASGHLHTQKWAAHL*

Sequence

>CNT30524187
CATCCTTGTCAAGGTTACACTGTTTAGCAGTGCTGATGATTGAGCTCACAATCTGAGGACCACGCCCTGTGTCCTTGAGAGACTGGTAAGAAGAGATGAG
CTCTGACAGCTGCTTGAGCCCCTTGTAGAGACCGGCATTCTCAGCTGGTGGTGTCAGGTAGCTGATGGTGTTTGCATAGCTCCGGCGCTTGGCGACGGTT
GCCTCTGATGGGTTGTTTGCTGCATAGTAGTAGATGTTGGGGATGTTGCCAATGAGACTGTCAGGGTAGCAGGTATCACTCATCCCAACCTGTTTGCCCG
GCATGAACTCGAGGGATCCATGTGTGCCGAAGTGGAGAACAGCATCAGCCTGGAAGATCTTCTCAACAAAGGTGTAGTATGCTGCAAAGCCATGGTGAGG
GCTGGCAGACTTTGAGAACAGAAGCCGCATCGGGTCACCTTCATACCCAAAAGTGGGCTGCACACCTATGAAGACATTGCCATACTGCTTCCCATAGACA
AGGAGGTTCCCAGGTGGCTTGCCCCAGTTCTCCTCCAGCAAGGAGGCATAGGAAGTGAGAGACTGGTACTCCCGCACATTCATGCGGTAAGCGACATTGA
GATTCGGACTGTTGAACTGGGCCTCCTTGTCATGGATCACCTCCTCGATGAGG