Detailed information on CNT30133288


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 1e-67

BLAST vs NONCODE:
NONPOPT001712, E-value = 3e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676056Lolium perenneSetaria viridis35.3121.2490.4250forward
CNT30524187Lolium perenneSetaria italica55.5160.1890.33393forward
CNT30641519Lolium perenneNymphaea colorata41.5333.1882.99294forward
CNT30513968Lolium perenneJuglans regia34.7560.2982.11246forward
CNT30710265Lolium perenneGlycine max40.5462.9479.79287forward
CNT30552959Lolium perenneOryza glaberrima16.245389.57115forward
CNT30248818Lolium perenneAvena sativa38.8440.6896275forward
CNT30659481Lolium perenneTriticum dicoccoides35.3159.193.6250forward
CNT3017824Lolium perenneZea mays34.185587.19242forward
CNT30347532Lolium perenneEragrostis tef33.1945.0289.79235forward
CNT30426485Lolium perennePapaver somniferum40.1117.1683.1284forward
CNT30328631Lolium perenneAsparagus officinalis10.7330.8985.5376forward
CNT3036031Lolium perenneCucumis melo26.9831.7380.63191forward
CNT30575876Lolium perenneOryza barthii32.3436.0687.34229forward
CNT30585285Lolium perenneEchinochloa crusgalli42.9441.0889.47304forward
CNT30603839Lolium perenneOryza punctata54.9423.8489.2389forward

Expression of CNT30133288

Peptides detected in this lncRNA

>peptide 1 (39 aa)
DDINPRTSKLLNADRLHTVDTAKAISNRLHTKHPKHLGK*

>peptide 2 (32 aa)
MGCLLHSSRCWGCYQSDYQDSMHHSSRLVSRA*

>peptide 3 (84 aa)
MLSVPHKTSAIVSGYFPPLSAFCRSSRRSTTTLALFMAAAVGIDCGSRAWMFFPVGRTFGLHCFAVLMIELTIWLPRPVSLRDW*

>peptide 4 (42 aa)
TTSTLGRPSSSMLTGSTRLTRPRPSVTGSTPSIQNTWASDSP*

Sequence

>CNT30133288
CGACGACATCAACCCTAGGACGTCCAAGCTCCTCAATGCTGACAGGCTCCACACGGTTGACACGGCCAAGGCCATCAGTAACCGGCTCCACACCAAGCAT
CCAAAACACCTGGGCAAGTGACTCGCCGTAGGTCTTGATGTTGTCAGTACCCCACAAGACAAGTGCAATTGTCTCGGGATATTTCCCACCATTGTCAGCC
TTTTGCCGCTCCAGCAGACGTTCCACAACAACCTTGGCACTCTTCATGGCAGCTGCAGTCGGGATTGACTGCGGGTCAAGAGCATGGATGTTCTTCCCTG
TTGGGAGAACCTTTGGGTTACACTGCTTTGCAGTGCTGATGATTGAGCTCACAATCTGGTTGCCACGTCCCGTGTCCTTGAGAGACTGGTAAGAGGCGAT
AAGCTCTGACAGCTGCTTCAGCCCCTTGTACAGACCGGCATTCTCAGCTGGTGGTGTGAGGTAGCTTATGGTGTTTGCATAGCTCCGACGCTTGGCAACT
GTTGCTTCTGATGGGTTGTTTGCTGCATAGTAGTAGATGTTGGGGATGTTACCAATCAGACTATCAGGATAGCATGCATCACTCATCCCGACTTGTTTCC
CGGGCATGAACTCAAGGGATCCGTGTGTGCCGAAATGCAGAACAGCATCTGCCTTGAAGATCTTCTCAACATAGGTGTAGTATGCTGCAAATCCATGGTG
TGGGCTGG