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Detailed information on CNT30676056


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 1e-130

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692202Setaria viridisOryza sativa35.2680.992.05415forward
CNT30523832Setaria viridisSetaria italica46.975.51100552forward
CNT30641519Setaria viridisNymphaea colorata28.0437.2581.52330forward
CNT30548454Setaria viridisIpomoea triloba5.2726.8487.162forward
CNT30248696Setaria viridisAvena sativa44.5237.5190.08524forward
CNT30659481Setaria viridisTriticum dicoccoides25.7471.6391.42303forward
CNT30133288Setaria viridisLolium perenne21.2435.3190.4250forward
CNT30347532Setaria viridisEragrostis tef10.3723.3790.98122forward
CNT30426485Setaria viridisPapaver somniferum30.7621.8782.6362forward
CNT30571440Setaria viridisVitis vinifera13.5937.381.88160forward
CNT30116351Setaria viridisOryza nivara36.0247.5992.22424forward
CNT30603839Setaria viridisOryza punctata30.1621.7591.27355forward
CNT3064891Setaria viridisSelaginella moellendorffii6.5423.488.3177forward

Expression of CNT30676056

Peptides detected in this lncRNA

>peptide 1 (31 aa)
LFGGMLELIHRANQFTGQCPQSCLQPLSRAP*

>peptide 2 (30 aa)
MLQSHGEGWQTLRTEAASGHLHTQKWAAHL*

>peptide 3 (31 aa)
MCAEVENSISLEDLLNKGVVCCKAMVRAGRL*

>peptide 4 (36 aa)
MWHLQLPEQAQMPCASPSCLPLERHCRMQRTCGSGS*

Sequence

>CNT30676056
CTATTTGGTGGAATGCTGGAACTGATCCATCGGGCAAACCAATTTACCGGTCAATGCCCTCAATCTTGTCTTCAACCTCTGAGTAGAGCTCCCTGAGCTT
TTCCAAATTCTCCTCTGACGTCTCCCAATAGCCTCTGCCGCTGGCTTCTAGGAAGGTCTGGACCAGCTTCCTGAATGAGTTGGGGTTGGTCTCCATGAGC
CTCTTCCTCATCGCCTCATCTTCAATGAATGTGGAATTTGCCTCCTCATAAACCCAGTTGTCAACTTGTCCGGATGTTGCACTCCACCCAACAGTGTTTG
TGAGCCGCTTCTCGATCTCTCTAACTCCCTCATAGCCGCTCTTCATCATCCCCTCATACCACTTTGGGTTCAGTAGCTTTGTCCTTGCATCAAGACGCAC
CGTCTCCGACAGTGTTCTCACCTGTGCATTTGCTGTGGTTGTATCTGCTATGTAAGAGGCAGGTGCCCGTCCATCCTTCCGCAGCCCTTGCACCAGCTTT
GTTGGGTCCGAGTCGAAGTAGTGGCTCACATCTGTCAGTGAGATCTCCGACGAGTCGAGGTTCTGGAATGTGGCATCTGCAGTTGCCAGAGCAAGCTCAA
ATGCCTTGCGCTTCTCCTTCATGCCTGCCCCTGGAGCGTCACTGTCGAATGCAAAGGACTTGCGGCTCAGGTAGCTGATGGTGTTTGCATAGCTCCGGCG
CTTGGCGACGGTTGCCTCTGATGGGTTGTTTGCTGCATAGTAGTAGATGTTGGGGATGTTGCCAATGAGACTGTCAGGGTAGCAGGTATCACTCATCCCA
ACCTGTTTGCCCGGCATGAACTCGAGGGATCCATGTGTGCCGAAGTGGAGAACAGCATCAGCCTGGAAGATCTTCTCAACAAAGGTGTAGTATGCTGCAA
AGCCATGGTGAGGGCTGGCAGACTTTGAGAACAGAAGCCGCATCGGGTCACCTTCATACCCAAAAGTGGGCTGCACACCTATGAAGACATTGCCATACTG
CTTCCCATAGACAAGGAGGTTTTCACCATCAGAATTGAGGTTCGGACTGTTGAACTGGGCCTCCTTGTCATGGATCACCTCCTCGATGAGGGCTTCAGGT
GTGTCTGGAAGGCCCTCAACGTTGTAGCCGTCCTTCTTGAGGTCTGAGAGGACAGAGTAAATGGAGCTGAACACATT