Detailed information on CNT30513968


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FNB0|CHLH_ARATH, E-value = 4e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676694Juglans regiaSetaria viridis48.0427.6884.69196forward
CNT30524187Juglans regiaSetaria italica58.8236.7583.75240forward
CNT30641519Juglans regiaNymphaea colorata67.431.0485.09275forward
CNT30524804Juglans regiaPhaseolus vulgaris36.0319.2289.12147forward
CNT30710265Juglans regiaGlycine max68.8761.6288.26281forward
CNT3084561Juglans regiaVigna radiata48.2833.2887.82197forward
CNT30659481Juglans regiaTriticum dicoccoides49.7547.9980.3203forward
CNT30133288Juglans regiaLolium perenne60.2934.7582.11246forward
CNT3017824Juglans regiaZea mays29.4127.2780.83120forward
CNT30347532Juglans regiaEragrostis tef48.5337.9380.81198forward
CNT30426485Juglans regiaPapaver somniferum58.3314.3882.77238forward
CNT30575700Juglans regiaOryza barthii27.713.5282.3113forward
CNT30585285Juglans regiaEchinochloa crusgalli5027.5782.84204forward
CNT30603839Juglans regiaOryza punctata65.9316.4882.53269forward

Expression of CNT30513968

Peptides detected in this lncRNA

>peptide 1 (45 aa)
SVPGSDEIPSSGRSNAAMLTSVATASMADGADNLWPSASVFKGLV*

>peptide 2 (29 aa)
MELTICGPRPVSLRDWYEEMSSLNCLRPL*

Sequence

>CNT30513968
AGTGTACCTGGGAGCGATGAAATTCCATCTTCAGGACGGTCTAATGCAGCAATGTTAACAAGTGTCGCAACTGCTTCCATGGCTGATGGAGCTGACAATT
TGTGGCCCTCGGCCAGTGTCTTTAAGGGATTGGTATGAGGAGATGAGCTCACTTAACTGCTTAAGGCCCTTGTAAAGCCCAGCATTTTCTGCTGGAGGAG
TCAGATAGCTAATGGTATTGGCATAGCTCCGGCGCTTGGCTATGGTTGCTTCGGATGGGTTATTAGCTGCATAGTAATAGACATTTGGAATGTTCCCAAT
CAGACTGTCAGGGTAGCAGACATCACTCATTCCCACCTGTTTTCCAGGCATGAATTCAAGAGATCCATGAGTGCCAAAATGAAGAACAGCATCAGCTTTG
AAAATTTT