Detailed information on CNT30347532


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676056Eragrostis tefSetaria viridis23.3710.3790.98122forward
CNT30524187Eragrostis tefSetaria italica47.5137.9893.15248forward
CNT30641519Eragrostis tefNymphaea colorata26.4415.5881.88138forward
CNT30513968Eragrostis tefJuglans regia37.9348.5380.81198forward
CNT30710265Eragrostis tefGlycine max45.2151.7579.24236forward
CNT3084561Eragrostis tefVigna radiata44.0638.8580230forward
CNT30659481Eragrostis tefTriticum dicoccoides18.222.4692.6395forward
CNT30133288Eragrostis tefLolium perenne45.0233.1989.79235forward
CNT3017824Eragrostis tefZea mays45.2153.6489.83236forward
CNT30360704Eragrostis tefLactuca sativa19.7322.1582.52103forward
CNT30426485Eragrostis tefPapaver somniferum46.3614.6278.51242forward
CNT30575700Eragrostis tefOryza barthii64.1840.0789.85335forward
CNT30585285Eragrostis tefEchinochloa crusgalli48.0833.9292.83251forward
CNT30603839Eragrostis tefOryza punctata49.4315.8191.86258forward

Expression of CNT30347532

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLGLLNWASLSWITSSMRASGVSGRPSTL*

>peptide 2 (70 aa)
VATASMAVGGSPITCRPQGRSRDSISMIFAYTFPTIRSCSFGASSSPSSGNGTSLSRLHCFAVLMMELTI*

>peptide 3 (32 aa)
MDHLLDESFWRVWKTLNIVAVILEILEDRVNGA

Sequence

>CNT30347532
TGTCGCAACAGCCTCAATGGCGGTGGGAGGTTCACCAATCACATGCAGACCACAAGGCAGGAGCCGTGATTCAATTTCCATGATCTTTGCGTACACCTTT
CCAACAATAAGGTCCTGCTCCTTTGGCGCGAGCTCCTCGCCTTCCTCAGGCAATGGAACATCCTTATCAAGGTTGCACTGTTTTGCAGTGCTAATGATGG
AGCTCACAATTTGAGGGCCACGCCCTGAGTCCTTGAGAGATTGGTAAGAGGAGATGAGCTCTGACAGCTGCTTGAGCCCCTTGTACAGACCAGCGTTCTC
AGCTGGTGGTGTCAGGTAGCTGATGGTGTTTGCATAGCTTCGGCGCTTGGCAACAGTTGCCTCTGATGGGTTGTTTGCTGCATAGTAGTAGATGTTGGGG
CTGTTGAACTGGGCTTCCTTGTCATGGATCACCTCCTCGATGAGAGCTTCTGGCGTGTCTGGAAGACCCTCAACATTGTAGCCGTCATTCTTGAGATCCT
TGAGGACAGAGTAAATGGAGCT