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Detailed information on CNT30585285


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676694Echinochloa crusgalliSetaria viridis22.0323.0296.93163forward
CNT30524187Echinochloa crusgalliSetaria italica42.748.3997.15316forward
CNT30641519Echinochloa crusgalliNymphaea colorata23.9219.9883.62177forward
CNT30513968Echinochloa crusgalliJuglans regia27.575082.84204forward
CNT30524804Echinochloa crusgalliPhaseolus vulgaris27.4326.5478.82203forward
CNT30710265Echinochloa crusgalliGlycine max42.8469.5280.76317forward
CNT3084561Echinochloa crusgalliVigna radiata31.0838.8580.43230forward
CNT30552959Echinochloa crusgalliOryza glaberrima8.7829.9589.2365forward
CNT30248818Echinochloa crusgalliAvena sativa2021.8986.49148forward
CNT30659481Echinochloa crusgalliTriticum dicoccoides22.739.7288.1168forward
CNT30133288Echinochloa crusgalliLolium perenne41.0842.9489.47304forward
CNT3017824Echinochloa crusgalliZea mays35.2759.3291.95261forward
CNT30347532Echinochloa crusgalliEragrostis tef33.9248.0892.83251forward
CNT30426485Echinochloa crusgalliPapaver somniferum42.4318.9781.21314forward
CNT30575700Echinochloa crusgalliOryza barthii27.4324.2892.61203forward
CNT30603839Echinochloa crusgalliOryza punctata44.4620.1691.19329forward

Expression of CNT30585285

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MRFKHSPKNPNKTLNLSLSALMNLVVDKYCTHGSERPNPRILLRLLETLTTCPLLFVVF*

>peptide 2 (28 aa)
MLGMLPMRLSGKQVSLIPTCLPGMNSRDP

>peptide 3 (67 aa)
MAPREASVICLRSSTSASMPLSLPLYTSSMSLPTVAASMPGSELMPSSGRSRAAMEHPCRGYTVLQC*

Sequence

>CNT30585285
GGCTCAACATAGCTTCCCTCAAGGGCAATCTTCAAGCTGCCCAGCTCATTGTCTTGCACAATGAGATTTAAGCACTCCCCCAAGAATCCAAACAAGACCC
TCAACTTGTCTCTGTCTGCTCTGATGAACTTGGTGGTGGACAAGTACTGCACCCATGGTTCTGAGAGACCAAACCCAAGAATTTTACTGAGATTGTTAGA
AACATTGACGACTTGCCCTTTGCTGTTTGTGGTCTTCTGAACGATTGCAGTGATGGCACCACGTGAAGCTTCAGTTATCTGCCTCAGAAGCTCAACATCA
GCCAGTATGCCCTTGTCACTTCCCCTGTACACATCTTCAATGTCCCTGCCCACTGTTGCAGCAAGTATGCCAGGCAGTGAGCTGATGCCTTCCTCTGGGC
GGTCAAGGGCGGCAATGGAACATCCTTGTCGAGGTTACACTGTTTTGCAGTGCTGATGATTGAGCTCACAATCTGAGGGCCACGCCCTGTATCCTTGAGA
GACTGGTAAGAAGAGATGAGCTCTGACAGCTGCTTGAGCCCCTTGTAGAGACCGGCATTCTCAGCTGGTGGTGTCAGGTAGCTGATGGTGTTTGCATAGC
TCCGGCGCTTGGCGACGGTGGCCTCTGATGGATTGTTTGCTGCATAGTAGTAGATGTTGGGAATGTTGCCAATGAGACTGTCAGGGAAGCAGGTATCACT
CATCCCAACCTGTTTGCCCGGCATGAACTCAAGGGACCCG