Detailed information on CNT30603839


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 2e-170

BLAST vs NONCODE:
NONPOPT001712, E-value = 2e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676056Oryza punctataSetaria viridis21.7530.1691.27355forward
CNT30524187Oryza punctataSetaria italica40.0110092.5653forward
CNT30641519Oryza punctataNymphaea colorata23.0442.4482.45376forward
CNT30513968Oryza punctataJuglans regia16.4865.9382.53269forward
CNT30524804Oryza punctataPhaseolus vulgaris11.8925.3681.44194forward
CNT30710265Oryza punctataGlycine max19.7970.8381.42323forward
CNT3084561Oryza punctataVigna radiata11.8932.7782.47194forward
CNT30659481Oryza punctataTriticum dicoccoides18.6371.8789.14304forward
CNT30133288Oryza punctataLolium perenne23.8454.9489.2389forward
CNT3017824Oryza punctataZea mays15.256.3687.9248forward
CNT30347532Oryza punctataEragrostis tef15.8149.4391.86258forward
CNT30426485Oryza punctataPapaver somniferum31.2530.8280.98510forward
CNT30328631Oryza punctataAsparagus officinalis4.5330.0886.4974forward
CNT30575700Oryza punctataOryza barthii13.3626.08100218forward
CNT30585285Oryza punctataEchinochloa crusgalli20.1644.4691.19329forward

Expression of CNT30603839

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MNNLLDEGLSCVRKTLNIVAILLQILEDGVDGVENIQVCRCANIAFVWWEAENSDGQFLLLLQQTNKEGNCFCVLCKPSHHTTLGMSIST*

>peptide 2 (31 aa)
MGTKVQNSISLEDLLNKGVVCCKAMVRASRF*

>peptide 3 (32 aa)
GKGTSLSRLHCFAVLMIELTICGPRPVSLRDW*

>peptide 4 (29 aa)
MIVLFHLKDLELQSVGSFTIYVMLQYIHQ*

>peptide 5 (41 aa)
MSTNDRIVSFEGLGTSVSRQFYHICNATIYSSVNFMLRYAP*

>peptide 6 (35 aa)
MKVNSELSRCDICGCLWSLAETMQFYTGTAIYTGTV

>peptide 7 (55 aa)
MELKTFRYAAVPTLPLSGGKLKTVMASFFSSCSRQTKKVIVSVCFANLVTIQHLE*

>peptide 8 (49 aa)
MVCITGIFISGLRHQMYKSSSWDEWRMCNTSFEHDSEVVKLIYLFSMKS*

Sequence

>CNT30603839
CGGGCAAGGGAACATCCTTGTCAAGATTACACTGTTTTGCAGTGCTAATGATTGAGCTCACAATCTGCGGACCACGTCCTGTGTCCTTGAGAGATTGGTA
AGAAGAGATGAGCTCTGAAAGCTGCTTGAGCCCCTTGTAGAGACCAGCATTTTCAGCTGGTGGTGTCAGGTAGCTTATGGTGTTTGCATAGCTTCTGCGC
TTGGCAACAGTTGCTTCTGATGGATTGTTTGCTGCATAGTAGTAGATATTGGGGATGTTGCCAATGAGACTGTCAGGATAGCATGCATCACTCATCCCAA
CCTGCTTCCCTGGCATGAACTCAAGAGACCCATGGGTACCAAAGTGCAGAACAGCATCAGCCTGGAAGATCTTCTCAACAAAGGTGTAGTATGCTGCAAA
GCCATGGTGAGGGCTAGCAGATTTTGAGAACAGAAGCCGCATCGGATCTCCTTCATAGCCAAAAGTGGGCTGAACTCCAATGAATACATTGCCATACTGT
TTCCCATAGACAAGGAGGTTCCCAGGTGGCTTGCCCCAGTTCTCCTCCAGCAAGGAGGCATAGGAAGTGAGTGACTGGTACTCCCGCACGTTCATGCGGT
AAGCAACATTGAGGTTGGGACTGTTGAATTGGGCCTCCTTATCATGAATAACCTCCTCGATGAGGGCCTCAGCTGTGTCCGGAAGACCCTCAACATTGTA
GCCATCCTTCTTCAGATCTTGGAGGACGGAGTAGATGGAGTTGAAAACATTCAGGTATGCCGCTGTGCCAACATTGCCTTTGTCTGGTGGGAAGCTGAAA
ACAGTGATGGCCAGTTTCTTCTCCTCCTGCAGCAGACAAACAAAGAAGGTAATTGTTTCTGTGTGCTTTGCAAACCTAGTCACCATACAACACTTGGAAT
GAGTATTTCCACTTAGGAACTATTCACGAAACTGCAAACTAGATAGCATAATTGGATTATGGGATCATACACATAAACTTTTGACTTTATGTCTACGAAT
GATCGTATTGTTTCATTTGAAGGACTTGGAACTTCAGTCAGTAGGCAGTTTTACCATATATGTAATGCTACAATATATTCATCAGTGAACTTCATGTTAA
GGTATGCACCATAGGGATTATGTAGCAAGCTTGTGGCATCGTTATGTACATGAGTTCTTCAGAGGATGGAAGAGTTGATTGATCGATTATACGAGTAGTT
CTTGTTCTCAGTTGGACATACTTTATGCACCTTAAGTATTGAGCTTTTTGTTCTCACATGATGTATTGTTTCATTTGAAGGATAACTTTCAGTTGGCAGC
TAAATGGTTGCATAACACGTGGCTTTTCATTGAACTTCATATCATGTGATGGTATGCATTACTGGAATTTTCATATCAGGATTGCGGCATCAAATGTACA
AGAGCTCTTCATGGGATGAATGGCGCATGTGCAATACCAGTTTTGAGCATGACAGTGAAGTTGTTAAGCTAATATATTTGTTTAGCATGAAATCTTAAAT
CACTCAAAAACCTCAAGAAGATATGAAAGTGAATTCAGAACTATCCAGATGTGACATTTGTGGTTGCCTTTGGTCTTTAGCAGAAACAATGCAATTCTAT
ACGGGTACTGCAATTTATACAGGAACTGTGTG