Detailed information on CNT3036031


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 1e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514102Cucumis meloJuglans regia41.8628.2584.92252forward
CNT30378440Cucumis meloArabidopsis thaliana16.1133.3383.5197forward
CNT30727458Cucumis meloCorchorus capsularis29.7327.7582.12179forward
CNT30382125Cucumis meloManihot esculenta44.3570.0884.27267forward
CNT30712554Cucumis meloGlycine max28.947.4187.36174forward
CNT3084502Cucumis meloVigna radiata43.8522.881.44264forward
CNT30538066Cucumis meloBrassica napus23.5926.4483.1142forward
CNT30552959Cucumis meloOryza glaberrima12.6235.0288.1676forward
CNT30173073Cucumis meloTrifolium pratense44.8557.9483.33270forward
CNT30248818Cucumis meloAvena sativa36.3832.480.37219forward
CNT30260882Cucumis meloBrassica rapa23.5921.8582.39142forward
CNT30133288Cucumis meloLolium perenne31.7326.9880.63191forward
CNT30619939Cucumis meloCajanus cajan43.363184.67261forward
CNT30426485Cucumis meloPapaver somniferum24.258.8283.56146forward
CNT30571520Cucumis meloVitis vinifera45.6848.1682.91275forward
CNT3031792Cucumis meloTheobroma cacao39.3758.8184.39237forward
CNT30726108Cucumis meloLupinus angustifolius36.0524.5884.79217forward

Expression of CNT3036031

Peptides detected in this lncRNA

>peptide 1 (33 aa)
FPLLHHASSRSITIKSKGLPTQIHVLELLLIIP*

>peptide 2 (42 aa)
SSSPSCQLQEHHNQKQRTSYSNTCLGVASHHSMKNSQQQDLC*

>peptide 3 (45 aa)
FLFSIMPAPGASQSKAKDFLLKYMSWSCFSSFHEEFSTARFMLDE*

>peptide 4 (73 aa)
MLSVPHNTRAIVSGYFPPFSTFCLSINLSTTIFALCIAAVVGIACGSRAWMFFPVGKTFGFLIGSPPGPGSTYF

Sequence

>CNT3036031
TTTCCTCTTCTCCATCATGCCAGCTCCAGGAGCATCACAATCAAAAGCAAAGGACTTCCTACTCAAATACATGTCTTGGAGTTGCTTCTCATCATTCCAT
GAAGAATTCTCAACAGCAAGATTTATGTTAGACGAGTAAGATCCAGACGCATTCGAAAAAACTCGAGTTGCAGCTTCTCGAACACCAATACCTAGGGCTT
GAGCTTGTTCCATTGCATGTTTCCTGACAAAGTTTTGCTCCTCAGGCTCATCCAATTCTGCAACCATCTTCACTGCTCGATCCAAAAGGTTCTACACGAT
TGACGCGACCAAAAGTATCTGCAACGGGCATTACGCCGACCATCCACAGAACTTGAGCCAAGGATTCACCGTAGGTCTTAATGTTATCAGTTCCCCACAA
TACAAGGGCAATTGTCTCAGGATATTTTCCTCCATTCTCAACCTTTTGCCTCTCTATCAACCTATCCACCACAATTTTTGCACTTTGCATTGCTGCTGTT
GTGGGAATTGCTTGTGGATCAAGGGCATGGATGTTCTTTCCTGTTGGTAAAACCTTTGGATTTCTGATCGGGTCACCCCCAGGGCCTGGCTCGACGTATT
TT